Your message dated Fri, 27 Apr 2018 06:56:10 +0000
with message-id <[email protected]>
and subject line Bug#896931: fixed in fastqc 0.11.7+dfsg-1
has caused the Debian Bug report #896931,
regarding fastqc: If the package libfindbin-libs-perl is not installed, fastqc
exits with an error immediately.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
896931: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=896931
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: fastqc
Version: 0.11.5+dfsg-6
Severity: grave
Justification: renders package unusable
Dear Maintainer,
Working in a basic cloud environment, I install fastqc via apt and try
to run it. It exits with an error. See below for command line example.
debian@40120a:~$ fastqc
Can't locate FindBin.pm in @INC (you may need to install the FindBin
module) (@INC contains: /etc/perl
/usr/local/lib/x86_64-linux-gnu/perl/5.24.1 /usr/local/share/perl/5.24.1
/usr/lib/x86_64-linux-gnu/perl5/5.24 /usr/share/perl5
/usr/lib/x86_64-linux-gnu/perl/5.24 /usr/share/perl/5.24
/usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at
/usr/bin/fastqc line 4.
BEGIN failed--compilation aborted at /usr/bin/fastqc line 4.
After this happened, I installed the package libfindbin-libs-perl via
apt. When trying again, fastqc runs as expected.
Best regards,
Rob Elshire
-- System Information:
Debian Release: 9.4
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 4.9.0-4-amd64 (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8),
LANGUAGE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
Versions of packages fastqc depends on:
ii default-jre [java7-runtime] 2:1.8-58
ii libcommons-math3-java 3.6.1-2
ii libhtsjdk-java 2.8.1+dfsg-1
ii libjbzip2-java 0.9.1-3
ii openjdk-8-jre [java7-runtime] 8u162-b12-1~deb9u1
fastqc recommends no packages.
fastqc suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: fastqc
Source-Version: 0.11.7+dfsg-1
We believe that the bug you reported is fixed in the latest version of
fastqc, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated fastqc package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 27 Apr 2018 08:31:31 +0200
Source: fastqc
Binary: fastqc
Architecture: source
Version: 0.11.7+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
fastqc - quality control for high throughput sequence data
Closes: 896931
Changes:
fastqc (0.11.7+dfsg-1) unstable; urgency=medium
.
[ Steffen Moeller ]
* debian/upstream/metadata: Added references to
OMICtools, SciCrunch, bio.tools registries
.
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.1.4
* Point Vcs-fields to Salsa
* debhelper 11
* Depends: libfindbin-libs-perl
Closes: #896931
* Drop alternative Depends: java7-runtime
* Set Java 9 as build target
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