Bug#825476: marked as done (cython: FTBFS with gcc-6 and glibc 2.23: Test failures)

Thu, 28 Jun 2018 14:03:49 -0700 

Your message dated Thu, 28 Jun 2018 22:51:34 +0200 (CEST)
with message-id <[email protected]>
and subject line Re: cython: FTBFS with gcc-6 and glibc 2.23: Test failures
has caused the Debian Bug report #825476,
regarding cython: FTBFS with gcc-6 and glibc 2.23: Test failures
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)


-- 
825476: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=825476
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message --- 
Source: cython
Version: 0.23.4+git4-g7eed8d8-1
Severity: important

>From my pbuilder build log (on amd64), using a chroot preferring
gcc-defaults and glibc from experimental:

...
Doctest: cppwrap.__test__.voidfunc (line 36) ... ok
test_embed (__main__.EmbedTest) ... ok

======================================================================
ERROR: runTest (__main__.CythonRunTestCase)
compiling (cpp) and running complex_numbers_T305
----------------------------------------------------------------------
Traceback (most recent call last):
  File "runtests.py", line 990, in run
    ext_so_path = self.runCompileTest()
  File "runtests.py", line 705, in runCompileTest
    self.test_directory, self.expect_errors, self.annotate)
  File "runtests.py", line 946, in compile
    so_path = self.run_distutils(test_directory, module, workdir, incdir)
  File "runtests.py", line 872, in run_distutils
    build_extension.run()
  File "/usr/lib/python2.7/distutils/command/build_ext.py", line 339, in run
    self.build_extensions()
  File "/usr/lib/python2.7/distutils/command/build_ext.py", line 448,
in build_extensions
    self.build_extension(ext)
  File "runtests.py", line 432, in build_extension
    _build_ext.build_extension(self, ext)
  File "/usr/lib/python2.7/distutils/command/build_ext.py", line 498,
in build_extension
    depends=ext.depends)
  File "/usr/lib/python2.7/dist-packages/numpy/distutils/ccompiler.py",
line 230, in CCompiler_compile
    single_compile(o)
  File "/usr/lib/python2.7/dist-packages/numpy/distutils/ccompiler.py",
line 194, in single_compile
    self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)
  File "/usr/lib/python2.7/dist-packages/numpy/distutils/unixccompiler.py",
line 52, in UnixCCompiler__compile
    raise CompileError(msg)
CompileError: Command "x86_64-linux-gnu-gcc -pthread -DNDEBUG -g
-fwrapv -O2 -Wall -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2
-g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
-I/build/cython-0.23.4+git4-g7eed8d8/tests/run
-I/usr/include/python2.7 -c complex_numbers_T305.cpp -o
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/complex_numbers_T305/complex_numbers_T305.o"
failed with exit status 1

======================================================================
ERROR: runTest (__main__.CythonRunTestCase)
compiling (cpp) and running complex_numbers_c99_T398
----------------------------------------------------------------------
Traceback (most recent call last):
  File "runtests.py", line 990, in run
    ext_so_path = self.runCompileTest()
  File "runtests.py", line 705, in runCompileTest
    self.test_directory, self.expect_errors, self.annotate)
  File "runtests.py", line 946, in compile
    so_path = self.run_distutils(test_directory, module, workdir, incdir)
  File "runtests.py", line 872, in run_distutils
    build_extension.run()
  File "/usr/lib/python2.7/distutils/command/build_ext.py", line 339, in run
    self.build_extensions()
  File "/usr/lib/python2.7/distutils/command/build_ext.py", line 448,
in build_extensions
    self.build_extension(ext)
  File "runtests.py", line 432, in build_extension
    _build_ext.build_extension(self, ext)
  File "/usr/lib/python2.7/distutils/command/build_ext.py", line 498,
in build_extension
    depends=ext.depends)
  File "/usr/lib/python2.7/dist-packages/numpy/distutils/ccompiler.py",
line 230, in CCompiler_compile
    single_compile(o)
  File "/usr/lib/python2.7/dist-packages/numpy/distutils/ccompiler.py",
line 194, in single_compile
    self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)
  File "/usr/lib/python2.7/dist-packages/numpy/distutils/unixccompiler.py",
line 52, in UnixCCompiler__compile
    raise CompileError(msg)
CompileError: Command "x86_64-linux-gnu-gcc -pthread -DNDEBUG -g
-fwrapv -O2 -Wall -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2
-g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
-I/build/cython-0.23.4+git4-g7eed8d8/tests/run
-I/usr/include/python2.7 -c complex_numbers_c99_T398.cpp -o
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/complex_numbers_c99_T398/complex_numbers_c99_T398.o"
failed with exit status 1

======================================================================
ERROR: runTest (__main__.CythonRunTestCase)
compiling (cpp) and running complex_numbers_cxx_T398
----------------------------------------------------------------------
Traceback (most recent call last):
  File "runtests.py", line 990, in run
    ext_so_path = self.runCompileTest()
  File "runtests.py", line 705, in runCompileTest
    self.test_directory, self.expect_errors, self.annotate)
  File "runtests.py", line 946, in compile
    so_path = self.run_distutils(test_directory, module, workdir, incdir)
  File "runtests.py", line 872, in run_distutils
    build_extension.run()
  File "/usr/lib/python2.7/distutils/command/build_ext.py", line 339, in run
    self.build_extensions()
  File "/usr/lib/python2.7/distutils/command/build_ext.py", line 448,
in build_extensions
    self.build_extension(ext)
  File "runtests.py", line 432, in build_extension
    _build_ext.build_extension(self, ext)
  File "/usr/lib/python2.7/distutils/command/build_ext.py", line 498,
in build_extension
    depends=ext.depends)
  File "/usr/lib/python2.7/dist-packages/numpy/distutils/ccompiler.py",
line 230, in CCompiler_compile
    single_compile(o)
  File "/usr/lib/python2.7/dist-packages/numpy/distutils/ccompiler.py",
line 194, in single_compile
    self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)
  File "/usr/lib/python2.7/dist-packages/numpy/distutils/unixccompiler.py",
line 52, in UnixCCompiler__compile
    raise CompileError(msg)
CompileError: Command "x86_64-linux-gnu-gcc -pthread -DNDEBUG -g
-fwrapv -O2 -Wall -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2
-g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
-I/build/cython-0.23.4+git4-g7eed8d8/tests/run
-I/usr/include/python2.7 -c complex_numbers_cxx_T398.cpp -o
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/complex_numbers_cxx_T398/complex_numbers_cxx_T398.o"
failed with exit status 1

----------------------------------------------------------------------
Ran 9549 tests in 2293.411s

FAILED (errors=3)
Following tests excluded because of missing dependencies on your system:
   Cython.Coverage
   run.asyncio_generators
   run.coverage_api
   run.coverage_cmd
   run.coverage_nogil
Couldn't find u'b'
Compiling 
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_fe0c472dd7a6124bd4ed0b19a48995d5.pyx
because it changed.
[1/1] Cythonizing
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_fe0c472dd7a6124bd4ed0b19a48995d5.pyx
Couldn't find u'b'
Compiling 
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_ebaa3ee4674dbe77ae7bd1f499dae2e3.pyx
because it changed.
[1/1] Cythonizing
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_ebaa3ee4674dbe77ae7bd1f499dae2e3.pyx
Couldn't find u'b'
Compiling 
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_5faa0d00d71cc352ba965492f4808903.pyx
because it changed.
[1/1] Cythonizing
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_5faa0d00d71cc352ba965492f4808903.pyx
Compiling 
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_9e26c6d0596acd18171704d8e6aedc8b.pyx
because it changed.
[1/1] Cythonizing
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_9e26c6d0596acd18171704d8e6aedc8b.pyx
Compiling 
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_960ea1085d0aa0ea6db089f127e4e510.pyx
because it changed.
[1/1] Cythonizing
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_960ea1085d0aa0ea6db089f127e4e510.pyx
Couldn't find u'b'
Compiling 
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_0797e16ff395636353463b739d925336.pyx
because it changed.
[1/1] Cythonizing
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_0797e16ff395636353463b739d925336.pyx
Couldn't find u'b'
Compiling 
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_495f6035fcf47252843b7e97e31bfce8.pyx
because it changed.
[1/1] Cythonizing
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_495f6035fcf47252843b7e97e31bfce8.pyx
Couldn't find u'b'
Compiling 
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_5e8cd0006e0bd9fdb6247fc3a69b4eeb.pyx
because it changed.
[1/1] Cythonizing
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_5e8cd0006e0bd9fdb6247fc3a69b4eeb.pyx
Couldn't find u'b'
Compiling 
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_59d3e99f90ff34db753eaa50d5ec3169.pyx
because it changed.
[1/1] Cythonizing
/build/cython-0.23.4+git4-g7eed8d8/build/work-dir/run/cpp/test_coroutines_pep492/_cython_inline_59d3e99f90ff34db753eaa50d5ec3169.pyx
ALL DONE
debian/rules:104: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 1
make[1]: Leaving directory '/build/cython-0.23.4+git4-g7eed8d8'
debian/rules:20: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
-- 
Daniel Schepler

--- End Message ---
--- Begin Message --- 
Version: 0.25.2-1

On Mon, 1 Aug 2016, Yaroslav Halchenko wrote:

> severity 825476 normal
> thanks
> 
> 0.23.4+git4-g7eed8d8-2 built just fine in sid a few days back with libc6
> 2.23: https://buildd.debian.org/status/package.php?p=cython&suite=unstable
> 
> If fails to build against anything in experimental it must not be of
> 'serious' (rc) severity since experimental is not intended for a
> release, and issues could pop up and out due to bugs in underlying
> toolchain etc, thus downgrading to normal for now.  Also might
> have been useful to include gcc-6 version since who knows -- may be gcc
> itself gets fixed up at some point 

More to the point, version 0.25.2-1 in stretch builds fine in both my
autobuilders and also in reproducible builds, so I think it should be
ok to consider this issue as fixed.

Thanks.

--- End Message ---

Reply via email to