Your message dated Tue, 10 Jul 2018 16:20:26 +0000
with message-id <[email protected]>
and subject line closing RFP: genomics.cn-soapsnp -- SNP detection in next
generation sequencing data
has caused the Debian Bug report #670174,
regarding RFP: genomics.cn-soapsnp -- SNP detection in next generation
sequencing data
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
670174: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=670174
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <[email protected]>
* Package name : genomics.cn-soapsnp
Version : 1.0.3
* URL : http://soap.genomics.org.cn/soapsnp.html
* License : GPL-3
Programming Lang: C++
Description : SNP detection in next generation sequencing data
Vcs-Browser: http://svn.debian.org/viewvc/debian-med/trunk/packages/soapsnp/
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/soapsnp/
For getting ideas on the cause of diseases or their response to
therapy, and for understanding either for a particular patient,
doctors around the globe are starting to look at the genes or the
whole genome and how that sequence is different from a healthy /
well responding individual.
.
SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis
Package). The program is a resequencing utility. It assembles the
consensus sequence for the genome of a newly sequenced individual based
on the alignment of the raw sequencing reads on a known reference. SNPs
can then be identified on the consensus sequence through the comparison
with the reference.
.
SOAPsnp uses a method based on Bayes' theorem (the reverse probability
model) to call consensus genotype by carefully considering the data
quality, alignment, and recurring experimental errors. All these kinds
of information was integrated into a single quality score for each base
in PHRED scale to measure the accuracy of consensus calling. Currently,
it supports the alignment format of SOAPaligner (soap2).
--- End Message ---
--- Begin Message ---
RFP 670174 has no visible progress for a long time, so closing.
--- End Message ---
