Your message dated Thu, 29 Nov 2018 07:19:05 +0000 with message-id <[email protected]> and subject line Bug#914708: fixed in r-bioc-biocparallel 1.16.1-1 has caused the Debian Bug report #914708, regarding r-bioc-biocparallel: FTBFS with Boost 1.67 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 914708: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=914708 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: r-bioc-biocparallel Version: 1.16.0-1 Severity: serious Tags: ftbfs Hi Maintainer R-bioc-biocparallel FTBFS [1] with Boost 1.67: make[1]: Entering directory '/build/1st/r-bioc-biocparallel-1.16.0/src' g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ipcmutex.cpp -o ipcmutex.o ipcmutex.cpp:7:36: error: use of deleted function 'boost::uuids::random_generator_pure::random_generator_pure(boost::uuids::random_generator_pure&&)' boost::uuids::random_generator(); ^ In file included from /usr/include/boost/uuid/uuid_generators.hpp:17, from ipcmutex.cpp:3: /usr/include/boost/uuid/random_generator.hpp:149:7: note: 'boost::uuids::random_generator_pure::random_generator_pure(boost::uuids::random_generator_pure&&)' is implicitly deleted because the default definition would be ill-formed: class random_generator_pure ^~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/uuid/random_generator.hpp:149:7: error: use of deleted function 'boost::uuids::detail::random_provider::random_provider(boost::uuids::detail::random_provider&&)' In file included from /usr/include/boost/uuid/random_generator.hpp:20, from /usr/include/boost/uuid/uuid_generators.hpp:17, from ipcmutex.cpp:3: /usr/include/boost/uuid/detail/random_provider.hpp:41:7: note: 'boost::uuids::detail::random_provider::random_provider(boost::uuids::detail::random_provider&&)' is implicitly deleted because the default definition would be ill-formed: class random_provider ^~~~~~~~~~~~~~~ /usr/include/boost/uuid/detail/random_provider.hpp:41:7: error: use of deleted function 'boost::noncopyable_::noncopyable::noncopyable(const boost::noncopyable_::noncopyable&)' In file included from /usr/include/boost/uuid/detail/random_provider.hpp:14, from /usr/include/boost/uuid/random_generator.hpp:20, from /usr/include/boost/uuid/uuid_generators.hpp:17, from ipcmutex.cpp:3: /usr/include/boost/core/noncopyable.hpp:34:7: note: declared here noncopyable( const noncopyable& ) = delete; ^~~~~~~~~~~ make[1]: *** [/usr/lib/R/etc/Makeconf:168: ipcmutex.o] Error 1 make[1]: Leaving directory '/build/1st/r-bioc-biocparallel-1.16.0/src' make[1]: Entering directory '/build/1st/r-bioc-biocparallel-1.16.0/src' make[1]: Leaving directory '/build/1st/r-bioc-biocparallel-1.16.0/src' ERROR: compilation failed for package 'BiocParallel' Regards Graham [1] https://tests.reproducible-builds.org/debian/history/amd64/r-bioc-biocparallel.html
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--- Begin Message ---Source: r-bioc-biocparallel Source-Version: 1.16.1-1 We believe that the bug you reported is fixed in the latest version of r-bioc-biocparallel, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Dylan Aïssi <[email protected]> (supplier of updated r-bioc-biocparallel package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 29 Nov 2018 07:48:46 +0100 Source: r-bioc-biocparallel Binary: r-bioc-biocparallel Architecture: source Version: 1.16.1-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers <[email protected]> Changed-By: Dylan Aïssi <[email protected]> Description: r-bioc-biocparallel - BioConductor facilities for parallel evaluation Closes: 914708 Changes: r-bioc-biocparallel (1.16.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Add patch to fix FTBFS with boost 1.67 (Closes: #914708) Thanks Graham Inggs. * Add Testsuite: autopkgtest-pkg-r Checksums-Sha1: e20a1917cdf565fab346b9414b924ff5b3a965d9 2161 r-bioc-biocparallel_1.16.1-1.dsc d8680f98322fa09510986e632db093f6515dc660 899552 r-bioc-biocparallel_1.16.1.orig.tar.gz ff11b9ccb5815fec857fd173a18caf2e96683581 4404 r-bioc-biocparallel_1.16.1-1.debian.tar.xz 288e5749f9e8de633dc57652b5fbe64301931065 9834 r-bioc-biocparallel_1.16.1-1_amd64.buildinfo Checksums-Sha256: 0fc0fcf339abfe05556555d1827274016e126e993c9df40957f53cbbece357be 2161 r-bioc-biocparallel_1.16.1-1.dsc 686194e6e9559784d421a9b73ab79b621e955dbbde22e1440404e4213fcdc55a 899552 r-bioc-biocparallel_1.16.1.orig.tar.gz a3552b38631a2e3777bfbc29197142ef3ea396fe77b104828e1299e4060677d7 4404 r-bioc-biocparallel_1.16.1-1.debian.tar.xz efea12de488c5b5dd0d1194964c8a7f9b9e46b16ba162e6a333a06e8e123c4d9 9834 r-bioc-biocparallel_1.16.1-1_amd64.buildinfo Files: 79ddf2961d0cbc2785e1534d9bf0476f 2161 gnu-r optional r-bioc-biocparallel_1.16.1-1.dsc ae95abc19a13a03d87a6c8178e98f0c6 899552 gnu-r optional r-bioc-biocparallel_1.16.1.orig.tar.gz da7f573f354ed0bf14496326f473da1d 4404 gnu-r optional r-bioc-biocparallel_1.16.1-1.debian.tar.xz bc647aba93a4de39112cd50ac52d7aa4 9834 gnu-r optional r-bioc-biocparallel_1.16.1-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEmjwHvQbeL0FugTpdYS7xYT4FD1QFAlv/jewSHGRhaXNzaUBk ZWJpYW4ub3JnAAoJEGEu8WE+BQ9UQdsQAJSrIE0/doCkvl1t4YIrsAtm6iIqHV0h kGLrJKptVnsolm9fw7hDvbTXMWGHwLK2fC284Jw5FBTh58nnonOt+IH1VRxOOMTD aoahSHuBcpBLoB3K0W3LczzoB+fH6AR6HMLExG8K1m1npHeRJPHqtui9yZlUXeeb pY7yg2+rqoKzR2IZHF0VwcHSpbxu33cxdItK+GUWpitTztlUS8OSsAOmbOT6hRjE ckZI8PufQjxvDIHaScqS2I67DDEYZl8bTNFWU2LrxXWsJQtMPbbn/KQWY2cLO6+2 9ujxRtR0IZOFCh6ggKjilzxdEblAuKRuqkC+MV23qOnNI677EuC4Y5rpguXU+4bW WrYKdsCFwaINqPVj/Cd0m9LPgKXynh9xbgOeLgKHdLqj/mm+k4GITeuhXWFSdh1f YfGKWGesHZunlCqLnaNqGyLSlLFLu8GFbgqN3U3/EXCodA7O+DgSsg9rUd2akjxf kZTyjbf06a3W6G4xwfFLx6F22MEPy3NJt/qP3h5QCpRjI71Ak+CDJSa5naU1dnzM 1PvQFEd0Y1LzDJbVC2T/gTiIKssh6ZYO4xb3cMYNoKed5bY8uR3auR55R+l8MRzr vhJc/aLkhlCdSuniA4WxQWnnp05jAY+Y4hmr/CX34q/NwbC0XYoPsDh8sTxXReKK iMpun4V994VD =2C7b -----END PGP SIGNATURE-----
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