Your message dated Mon, 03 Dec 2018 07:19:44 +0000
with message-id <[email protected]>
and subject line Bug#914731: fixed in r-bioc-biocparallel 1.16.2-1
has caused the Debian Bug report #914731,
regarding r-bioc-biocparallel: autopkgtest regression
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
914731: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=914731
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: r-bioc-biocparallel
Version: 1.14.0-1
X-Debbugs-CC: [email protected]
User: [email protected]
Usertags: regression
Hi Maintainer
Since the upload of 1.14.0-1, r-bioc-biocparallel has been failing its
own autopkgtests with the following error:
RUNIT TEST PROTOCOL -- Mon Nov 26 17:50:31 2018
***********************************************
Number of test functions: 63
Number of deactivated test functions: 1
Number of errors: 1
Number of failures: 1
1 Test Suite :
BiocParallel RUnit Tests - 63 test functions, 1 error, 1 failure
DEACTIVATED test_SnowParam_workers: 'snow' and/or 'Rmpi' package did not load
ERROR in test_bpaggregate: Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function 'bpworkers<-' for
signature '"SerialParam", "numeric"'
FAILURE in test_stop.on.error: Error in
checkIdentical(c("bplist_error", "bperror", "error", "condition"), :
FALSE
Error in BiocGenerics:::testPackage("BiocParallel") :
unit tests failed for package BiocParallel
Test files with failing tests
test_SnowParam.R
test_SnowParam_workers
test_bpaggregate.R
test_bpaggregate
test_errorhandling.R
test_stop.on.error
Execution halted
autopkgtest [17:50:31]: test run-unit-test: -----------------------]
autopkgtest [17:50:31]: test run-unit-test: - - - - - - - - - -
results - - - - - - - - - -
run-unit-test FAIL non-zero exit status 1
Regards
Graham
[1] https://ci.debian.net/packages/r/r-bioc-biocparallel/unstable/amd64/
--- End Message ---
--- Begin Message ---
Source: r-bioc-biocparallel
Source-Version: 1.16.2-1
We believe that the bug you reported is fixed in the latest version of
r-bioc-biocparallel, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dylan Aïssi <[email protected]> (supplier of updated r-bioc-biocparallel
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
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Hash: SHA512
Format: 1.8
Date: Mon, 03 Dec 2018 08:04:22 +0100
Source: r-bioc-biocparallel
Binary: r-bioc-biocparallel
Architecture: source
Version: 1.16.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Dylan Aïssi <[email protected]>
Description:
r-bioc-biocparallel - BioConductor facilities for parallel evaluation
Closes: 914731
Changes:
r-bioc-biocparallel (1.16.2-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Remove boost_1.67.patch, applied upstream.
* Fix autopkgtest (Closes: #914731)
Remove useless patches: fix_syntax_of_test_script.patch
and ignore_test_requiring_rmpi.patch.
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