Your message dated Sun, 06 Jan 2019 18:49:38 +0000 with message-id <[email protected]> and subject line Bug#917591: fixed in libbpp-seq-omics 2.4.1-2 has caused the Debian Bug report #917591, regarding libbpp-seq-omics: FTBFS (dh_makeshlibs fails) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 917591: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=917591 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:libbpp-seq-omics Version: 2.4.1-1 Severity: serious Tags: ftbfs Dear maintainer: I tried to build this package in buster but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 8.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: [... snipped ...] _ZNK3bpp13AlphabetState5cloneEv@Base 2.4.1 _ZNK3bpp13CodonAlphabet23getUnknownCharacterCodeEv@Base 2.4.1 _ZNK3bpp14LetterAlphabet16isCharInAlphabetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 @@ -991,9 +991,9 @@ _ZThn8_N3bpp22SequenceWithAnnotation10setContentERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE@Base 2.4.1 _ZThn8_N3bpp22SequenceWithAnnotation10setContentERKSt6vectorIiSaIiEE@Base 2.4.1 _ZTv0_n112_NK3bpp23VectorSequenceContainer20getNumberOfSequencesEv@Base 2.4.1 - _ZTv0_n144_NK3bpp12SequenceMask7getTypeB5cxx11Ev@Base 2.4.1 +#MISSING: 2.4.1-1# _ZTv0_n144_NK3bpp12SequenceMask7getTypeB5cxx11Ev@Base 2.4.1 _ZTv0_n144_NK3bpp15SequenceQuality7getTypeB5cxx11Ev@Base 2.4.1 - _ZTv0_n152_NK3bpp12SequenceMask11isValidWithERKNS_22SequenceWithAnnotationEb@Base 2.4.1 +#MISSING: 2.4.1-1# _ZTv0_n152_NK3bpp12SequenceMask11isValidWithERKNS_22SequenceWithAnnotationEb@Base 2.4.1 _ZTv0_n152_NK3bpp15SequenceQuality11isValidWithERKNS_22SequenceWithAnnotationEb@Base 2.4.1 _ZTv0_n168_NK3bpp12EdSymbolListixEm@Base 2.4.1 _ZTv0_n168_NK3bpp15BasicSymbolListixEm@Base 2.4.1 @@ -1003,7 +1003,7 @@ _ZTv0_n24_N3bpp10BppIntegerD1Ev@Base 2.4.1 _ZTv0_n24_N3bpp11MafSequenceD0Ev@Base 2.4.1 _ZTv0_n24_N3bpp11MafSequenceD1Ev@Base 2.4.1 - _ZTv0_n24_N3bpp12SequenceMaskD0Ev@Base 2.4.1 +#MISSING: 2.4.1-1# _ZTv0_n24_N3bpp12SequenceMaskD0Ev@Base 2.4.1 _ZTv0_n24_N3bpp13AlphabetStateD0Ev@Base 2.4.1 _ZTv0_n24_N3bpp13AlphabetStateD1Ev@Base 2.4.1 _ZTv0_n24_N3bpp13BasicSequenceD0Ev@Base 2.4.1 @@ -1142,7 +1142,7 @@ _ZTv0_n48_N3bpp25SimpleMafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi@Base 2.4.1 _ZTv0_n48_N3bpp36CsvStatisticsOutputIterationListener14iterationStopsEv@Base 2.4.1 _ZTv0_n48_NK3bpp12EdSymbolList11getAlphabetEv@Base 2.4.1 - _ZTv0_n48_NK3bpp12SequenceMask11isRemovableEv@Base 2.4.1 +#MISSING: 2.4.1-1# _ZTv0_n48_NK3bpp12SequenceMask11isRemovableEv@Base 2.4.1 _ZTv0_n48_NK3bpp15SequenceQuality11isRemovableEv@Base 2.4.1 _ZTv0_n48_NK3bpp21AbstractMafStatistics9getResultEv@Base 2.4.1 _ZTv0_n48_NK3bpp22SequenceWithAnnotation7getNameB5cxx11Ev@Base 2.4.1 @@ -1162,7 +1162,7 @@ _ZTv0_n56_N3bpp34SiteFrequencySpectrumMafStatistics7computeERKNS_8MafBlockE@Base 2.4.1 _ZTv0_n56_N3bpp37FourSpeciesPatternCountsMafStatistics7computeERKNS_8MafBlockE@Base 2.4.1 _ZTv0_n56_NK3bpp12EdSymbolList4sizeEv@Base 2.4.1 - _ZTv0_n56_NK3bpp12SequenceMask8isSharedEv@Base 2.4.1 +#MISSING: 2.4.1-1# _ZTv0_n56_NK3bpp12SequenceMask8isSharedEv@Base 2.4.1 _ZTv0_n56_NK3bpp15BasicSymbolList4sizeEv@Base 2.4.1 _ZTv0_n56_NK3bpp15SequenceQuality8isSharedEv@Base 2.4.1 _ZTv0_n64_N3bpp16GffFeatureReader21getFeaturesOfSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERNS_18SequenceFeatureSetE@Base 2.4.1 dh_makeshlibs: failing due to earlier errors make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:10: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- The build was made in my autobuilder with "dpkg-buildpackage -B" but it also fails here: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbpp-seq-omics.html where you can get a full build log if you need it. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
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--- Begin Message ---Source: libbpp-seq-omics Source-Version: 2.4.1-2 We believe that the bug you reported is fixed in the latest version of libbpp-seq-omics, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated libbpp-seq-omics package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 06 Jan 2019 17:30:24 +0100 Source: libbpp-seq-omics Binary: libbpp-seq-omics-dev libbpp-seq-omics3 Architecture: source Version: 2.4.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: libbpp-seq-omics-dev - Bio++ Sequence library: genomics components (development files) libbpp-seq-omics3 - Bio++ Sequence library: genomics components Closes: 917591 Changes: libbpp-seq-omics (2.4.1-2) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. . [ Andreas Tille ] * Easier way to provide symbols for amd64 only * Adapt symbols Closes: #917591 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright Checksums-Sha1: df1aa515501ff0a1d4f1a355719a0c5478ad4e4e 2216 libbpp-seq-omics_2.4.1-2.dsc 9f372cc88be82556ade5a4fdfe2ae1de9cba130d 16960 libbpp-seq-omics_2.4.1-2.debian.tar.xz Checksums-Sha256: 096fd1836bb12ae93495898109e6d30d4e3bbe3dca2a25aa64c47fc374dbc573 2216 libbpp-seq-omics_2.4.1-2.dsc e63aa79982b5911fdc3d996a653e991f17d64735cbb3909a889c8d9c8653c2f3 16960 libbpp-seq-omics_2.4.1-2.debian.tar.xz Files: b0ffe9ab7893d82b0f35eb485f1a5d0e 2216 science optional libbpp-seq-omics_2.4.1-2.dsc 621800926d02435739a12eadb6068589 16960 science optional libbpp-seq-omics_2.4.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwyRt4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGY2g/9EbprDLMyYdWXfQCyE2iVtu4AKjVmseGF Y3a88TnEuKIaqIihTlYo/yxlPm1YgsFAxA7Elx5SQ7b7UIbMRyzPXq03/lAW+LK8 L+5S0TQJSr1JxSFS4AnY3IPwG1SnYoUb8FFmZNwh1vuJw5ICIxKQbyHVQPRsMsjC 6vv2PBBE0Dp90bvpgS+ELPPmnOKkwWJjzrjgn4oECsukRWRKlb6Ogz1AEiTU7XQx CwB4y1QWk7m5t5ggtl/xMJ1H5EFVh6qymKnG3O/YfgU8J4mKqMpikhCOesUZc0b8 tTEc45PidzbnRSAy0gfoSrdpBOdL1IRuftWipZAD4O2Mbn5W3whlLmp+qjFKpOYc wTQaR6fUxI/48SCCV8QGNkcA8pUl7wn6LNnhi79OGMJ4/CM8mlcBDmMkB+si/n0x BIyAVKpHNWJNgdsKPs8+eRjqrhUUw4fop4hjZkZMVKW7RXqff1Vu9aae/GuigWne FcqiNC1klUWi5nkrTf/Stv2NAJwNwa7thcnpS8M9n4Id7QggqnE0CCUMyZ1upZkb A4lBaeXE2ZDD9yRsGY4C5jNExFO8dJgp+UgsUdX3DxlhqifpHpHiptfdwUAqnJaQ Zw/4pjGHaQ/Y1GkjkQ3gv7rxHj3+1lYqW9waLFG8GMQYOU3FCGnHTmO5oFHTgKXy bpEgReBbkH8= =NduF -----END PGP SIGNATURE-----
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