Your message dated Fri, 15 Feb 2019 07:57:11 +0000
with message-id <[email protected]>
and subject line Bug#922196: fixed in t-coffee 12.00.7fb08c2-4
has caused the Debian Bug report #922196,
regarding t-coffee FTCBFS: confuses C/C++ compilers
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
922196: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=922196
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: t-coffee
Version: 12.00.7fb08c2-3
Tags: patch
User: [email protected]
Usertags: rebootstrap
Hi Andreas,
thank you for quickly removing the -i flag. Now diagnosing why t-coffee
fails to cross build became a lot easier. As it happens, the upstream
Makefile stores g++ in CC, but for cross compilation dh_auto_build
overrides that with a C cross compiler. That doesn't work well. All we
need to do here is store the C++ compiler in CC. Please consider
applying the attached patch (possibly after buster).
Helmut
diff --minimal -Nru t-coffee-12.00.7fb08c2/debian/changelog
t-coffee-12.00.7fb08c2/debian/changelog
--- t-coffee-12.00.7fb08c2/debian/changelog 2019-02-12 19:37:40.000000000
+0100
+++ t-coffee-12.00.7fb08c2/debian/changelog 2019-02-13 06:40:44.000000000
+0100
@@ -1,3 +1,10 @@
+t-coffee (12.00.7fb08c2-3.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix FTCBFS: Pass C++ compiler as CC. (Closes: #-1)
+
+ -- Helmut Grohne <[email protected]> Wed, 13 Feb 2019 06:40:44 +0100
+
t-coffee (12.00.7fb08c2-3) unstable; urgency=medium
* Do not use -i flag to ignore build failures
diff --minimal -Nru t-coffee-12.00.7fb08c2/debian/rules
t-coffee-12.00.7fb08c2/debian/rules
--- t-coffee-12.00.7fb08c2/debian/rules 2019-02-12 19:37:40.000000000 +0100
+++ t-coffee-12.00.7fb08c2/debian/rules 2019-02-13 06:40:43.000000000 +0100
@@ -11,7 +11,7 @@
dh $@ --sourcedirectory=t_coffee_source
override_dh_auto_build:
- dh_auto_build -- USER_BIN=../bin/ FCC="$(FCC)" all
+ dh_auto_build -- USER_BIN=../bin/ FCC="$(FCC)" 'CC=$$(CXX)' all
override_dh_auto_clean:
rm -rf t_coffee_source/*.o t_coffee_source/t_coffee bin/t_coffee
$(shell find example/ -size 0) bin/t_coffee
--- End Message ---
--- Begin Message ---
Source: t-coffee
Source-Version: 12.00.7fb08c2-4
We believe that the bug you reported is fixed in the latest version of
t-coffee, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated t-coffee package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 15 Feb 2019 07:43:22 +0100
Source: t-coffee
Binary: t-coffee t-coffee-examples
Architecture: source
Version: 12.00.7fb08c2-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
t-coffee - Multiple Sequence Alignment
t-coffee-examples - annotated examples for the use of T-Coffee
Closes: 922196
Changes:
t-coffee (12.00.7fb08c2-4) unstable; urgency=medium
.
[ Helmut Grohne ]
* Fix FTCBFS: Pass C++ compiler as CC.
Closes: #922196
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