Your message dated Tue, 07 May 2019 07:18:22 +0000
with message-id <[email protected]>
and subject line Bug#928447: fixed in patman 1.2.2+dfsg-6
has caused the Debian Bug report #928447,
regarding patman FTCBFS: upstream Makefile hard codes tools
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
928447: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=928447
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: patman
Version: 1.2.2+dfsg-5
Tags: patch upstream
User: [email protected]
Usertags: rebootstrap
patman fails to cross build from source, because the upstream Makefile
hard codes g++. It also hard codes "install -s", which breaks generation
of -dbgsym packages and DEB_BUILD_OPTIONS=nostrip in addition to
breaking cross compilation. Making these tools substitutable is enough
to fix all of these. Please consider applying the attached patch.
Helmut
--- patman-1.2.2+dfsg.orig/Makefile
+++ patman-1.2.2+dfsg/Makefile
@@ -9,6 +9,7 @@
prefix := ${HOME}
version := 1.2
+INSTALL ?= install
TARGETS := patman
OBJS := prefix_tree.o fasta.o main.o
CXXFLAGS += -Wall
@@ -19,16 +20,16 @@
all: $(TARGETS)
patman: $(OBJS)
- g++ $(CXXFLAGS) -o $@ $(OBJS) $(LDFLAGS) $(LDLIBS)
+ $(CXX) $(CXXFLAGS) -o $@ $(OBJS) $(LDFLAGS) $(LDLIBS)
%.o: %.cpp
- g++ -DVERSION="\"$(version)\"" $(CPPFLAGS) $(CXXFLAGS) -c -o $@ $<
+ $(CXX) -DVERSION="\"$(version)\"" $(CPPFLAGS) $(CXXFLAGS) -c -o $@ $<
install: $(TARGETS)
- install -d ${prefix}/bin
- install -d ${prefix}/share/man/man1
- install -s -m755 $^ ${prefix}/bin
- install -m644 patman.1 ${prefix}/share/man/man1
+ $(INSTALL) -d ${prefix}/bin
+ $(INSTALL) -d ${prefix}/share/man/man1
+ $(INSTALL) -s -m755 $^ ${prefix}/bin
+ $(INSTALL) -m644 patman.1 ${prefix}/share/man/man1
fasta.o: fasta.h
prefix_tree.o: prefix_tree.h global.h
--- End Message ---
--- Begin Message ---
Source: patman
Source-Version: 1.2.2+dfsg-6
We believe that the bug you reported is fixed in the latest version of
patman, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated patman package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 07 May 2019 08:56:07 +0200
Source: patman
Binary: patman
Architecture: source
Version: 1.2.2+dfsg-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
patman - rapid alignment of short sequences to large databases
Closes: 928447
Changes:
patman (1.2.2+dfsg-6) unstable; urgency=medium
.
[ Helmut Grohne ]
* Do not hardcode tools in upstream Makefile
Closes: #928447
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