Your message dated Tue, 08 Oct 2019 09:34:37 +0000
with message-id <[email protected]>
and subject line Bug#941805: fixed in hmmer 3.2.1+dfsg-3
has caused the Debian Bug report #941805,
regarding hmmer: autopkgtest regression: hmmpgmd_ga] ... FAILED [crash!]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
941805: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=941805
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: hmmer
Version: 3.2.1+dfsg-2
X-Debbugs-CC: [email protected]
User: [email protected]
Usertags: regression
Dear maintainers,
With a recent upload of hmmer the autopkgtest of hmmer fails in testing
when that autopkgtest is run with the binary packages of hmmer from
unstable. It passes when run with only packages from testing. In tabular
form:
pass fail
hmmer from testing 3.2.1+dfsg-2
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=hmmer
https://ci.debian.net/data/autopkgtest/testing/amd64/h/hmmer/3078564/log.gz
exercise 292 [ hmmpgmd_ga] ... FAILED [crash!]
exercise 293 [ rewind] ... ok.
exercise 294 [ brute-itest] ... ok.
exercise 295 [ hmmpress-itest] ... ok.
exercise 296 [ h39] ... ok.
exercise 297 [ h45] ... ok.
exercise 298 [ h50] ... ok.
exercise 299 [ h82] ... ok.
1 of 299 exercises at level <= 2 FAILED.
signature.asc
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: hmmer
Source-Version: 3.2.1+dfsg-3
We believe that the bug you reported is fixed in the latest version of
hmmer, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated hmmer package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 08 Oct 2019 10:53:29 +0200
Source: hmmer
Binary: hmmer hmmer-doc hmmer-examples
Architecture: source
Version: 3.2.1+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Description:
hmmer - profile hidden Markov models for protein sequence analysis
hmmer-doc - profile hidden Markov models for protein sequence analysis (docs)
hmmer-examples - profile hidden Markov models for protein sequence analysis
(examp
Closes: 941805
Changes:
hmmer (3.2.1+dfsg-3) unstable; urgency=medium
.
[ Michael R. Crusoe ]
* Team upload.
* HMMER3 has long required SSE or Altivec/VMX instruction support and the
3.2.1 release enforces this, so we will follow upstreams lead:
debian/control: Architecture: any-amd64 any-i386 powerpc ppc64 x32
* debhelper-compat 12
* Enable a verbose build log
* Fixed the buildsystem to show commands executed and to build in parallel
* Using the above, fixed the buildsystem to enable hardening
* Fixed some spelling errors; thanks lintian!
* Made autopkgtests more verbose
Closes: #941805
.
[ Andreas Tille ]
* Standards-Version: 4.4.1
* Set upstream metadata fields: Bug-Submit.
* Remove obsolete fields Name, Contact from debian/upstream/metadata.
* DEP3 for skip check for threads
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