Your message dated Sat, 12 Oct 2019 22:00:41 +0000
with message-id <[email protected]>
and subject line Bug#941262: fixed in jellyfish 2.3.0-2
has caused the Debian Bug report #941262,
regarding jellyfish: autopkgtest regression: cannot stat
'/usr/share/doc/jellyfish-examples/examples/*'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
941262: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=941262
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: jellyfish
Version: 2.3.0-1
X-Debbugs-CC: [email protected]
User: [email protected]
Usertags: regression
Dear maintainers,
With a recent upload of jellyfish the autopkgtest of jellyfish fails in
testing when that autopkgtest is run with the binary packages of
jellyfish from unstable. It passes when run with only packages from
testing. In tabular form:
pass fail
jellyfish from testing 2.3.0-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it? If needed, please
change the bug's severity.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=jellyfish
https://ci.debian.net/data/autopkgtest/testing/amd64/j/jellyfish/3027495/log.gz
autopkgtest [02:14:05]: test run-unit-test: [-----------------------
cp: cannot stat '/usr/share/doc/jellyfish-examples/examples/*': No such
file or directory
autopkgtest [02:14:06]: test run-unit-test: -----------------------]
signature.asc
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: jellyfish
Source-Version: 2.3.0-2
We believe that the bug you reported is fixed in the latest version of
jellyfish, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated jellyfish
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 27 Sep 2019 18:29:29 +0200
Source: jellyfish
Binary: jellyfish libjellyfish-2.0-2 libjellyfish-2.0-dev python3-dna-jellyfish
libjellyfish-perl jellyfish-examples
Architecture: source amd64
Version: 2.3.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Description:
jellyfish - count k-mers in DNA sequences
jellyfish-examples - count k-mers in DNA sequences (examples for testing)
libjellyfish-2.0-2 - count k-mers in DNA sequences (dynamic library of
jellyfish)
libjellyfish-2.0-dev - count k-mers in DNA sequences (development files of
jellyfish)
libjellyfish-perl - count k-mers in DNA sequences (Perl bindings of jellyfish)
python3-dna-jellyfish - count k-mers in DNA sequences (Python bindings of
jellyfish)
Closes: 941262
Changes:
jellyfish (2.3.0-2) unstable; urgency=medium
.
* Restore jellyfish-examples, needed for the autopkgtest (Closes: #941262)
* Enable an additional two test categories in the autopkgtests
* Enabled htslib, to read SAM/BAM/CRAM files
* Restore python3-dna-jellyfish package
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