Your message dated Mon, 16 Dec 2019 09:04:06 +0000
with message-id <[email protected]>
and subject line Bug#939894: fixed in minia 3.2.1+git20191130.5b131b9-2
has caused the Debian Bug report #939894,
regarding minia: autopkgtest regression: X.contigs.fa: No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
939894: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=939894
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: minia
Version: 3.2.1-1
X-Debbugs-CC: [email protected]
User: [email protected]
Usertags: regression
Dear maintainers,
With a recent upload of minia the autopkgtest of minia fails in testing
when that autopkgtest is run with the binary packages of minia from
unstable. It passes when run with only packages from testing. In tabular
form:
pass fail
minia from testing 3.2.1-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it? If needed, please
change the bug's severity.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
PS: your package FTBFS on 3 architectures because of BD not available.
This *also* blocks migration.
[1] https://qa.debian.org/excuses.php?package=minia
https://ci.debian.net/data/autopkgtest/testing/amd64/m/minia/2914535/log.gz
autopkgtest [20:11:12]: test run-unit-test: [-----------------------
************ Run simple_test.sh ****************
Traceback (most recent call last):
File "compare_fasta.py", line 21, in <module>
s2 = read_seqs(fasta2)
File "compare_fasta.py", line 15, in read_seqs
for line in open(fasta):
IOError: [Errno 2] No such file or directory: 'X.contigs.fa'
has a known issue where the AAAA node gets repeated a few times, so it
should print NOT EQUAL. But should print '6', now:
grep: X.contigs.fa: No such file or directory
0
FAILED
autopkgtest [20:11:12]: test run-unit-test: -----------------------]
signature.asc
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: minia
Source-Version: 3.2.1+git20191130.5b131b9-2
We believe that the bug you reported is fixed in the latest version of
minia, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated minia package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 16 Dec 2019 09:26:55 +0100
Source: minia
Binary: minia
Architecture: source
Version: 3.2.1+git20191130.5b131b9-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
minia - short-read biological sequence assembler
Closes: 939894 943115
Changes:
minia (3.2.1+git20191130.5b131b9-2) unstable; urgency=medium
.
* Use 2to3 to port from Python2 to Python3
Closes: #943115
* Latest update also fixed autopkgtest issue
Closes: #939894
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