Your message dated Tue, 07 Jan 2020 21:19:50 +0000
with message-id <[email protected]>
and subject line Bug#948093: fixed in hyphy 2.5.1+dfsg-3
has caused the Debian Bug report #948093,
regarding hyphy: autopkgtest regression: Duplicate analysis keyword
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
948093: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=948093
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: hyphy
Version: 2.5.1+dfsg-1
X-Debbugs-CC: [email protected]
Severity: serious
User: [email protected]
Usertags: regression
Dear maintainers,
With a recent upload of hyphy the autopkgtest of hyphy fails in testing
when that autopkgtest is run with the binary packages of hyphy from
unstable. It passes when run with only packages from testing. In tabular
form:
pass fail
hyphy from testing 2.5.1+dfsg-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it? If needed, please
change the bug's severity.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=hyphy
https://ci.debian.net/data/autopkgtest/testing/amd64/h/hyphy/3845632/log.gz
autopkgtest [19:16:26]: test run-unit-tests: [-----------------------
Error:
Duplicate analysis keyword (not case sensitive) in {CLST, Apply
clustering methods for phylogeny reconstruction (UPGMA,WPGMA,complete or
minimal linkage) to nucleotide, protein and codon data, using MLE of
pairwise distances with user-selectable models. These methods produce
trees with global molecular clock., ClusterAnalysis.bf}
Check errors.log for execution error details.
autopkgtest [19:16:26]: test run-unit-tests: -----------------------]
signature.asc
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: hyphy
Source-Version: 2.5.1+dfsg-3
We believe that the bug you reported is fixed in the latest version of
hyphy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated hyphy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 07 Jan 2020 21:23:52 +0100
Source: hyphy
Architecture: source
Version: 2.5.1+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 948093
Changes:
hyphy (2.5.1+dfsg-3) unstable; urgency=medium
.
* Versioned Depends: hyphy-common (= ${source:Version})
Closes: #948093
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