Your message dated Tue, 28 Jan 2020 19:49:46 +0000
with message-id <[email protected]>
and subject line Bug#950053: fixed in pysal 2.1.0-1
has caused the Debian Bug report #950053,
regarding pysal FTBFS: test failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
950053: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=950053
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: pysal
Version: 2.0.0-1
Severity: serious
Tags: ftbfs
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/pysal.html
...
======================================================================
ERROR: test_spatial (pysal.model.spreg.tests.test_twosls_sparse.TestTSLS)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build/pysal/model/spreg/tests/test_twosls_sparse.py",
line 217, in test_spatial
reg = TSLS(self.y, self.X, self.yd, self.q, spat_diag=True, w=w)
File
"/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build/pysal/model/spreg/twosls.py",
line 458, in __init__
SUMMARY.TSLS(reg=self, vm=vm, w=w, spat_diag=spat_diag)
File
"/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build/pysal/model/spreg/summary_output.py",
line 104, in TSLS
beta_diag(reg, reg.robust)
File
"/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build/pysal/model/spreg/summary_output.py",
line 714, in beta_diag
reg.pr2 = diagnostics_tsls.pr2_aspatial(reg)
File
"/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build/pysal/model/spreg/diagnostics_tsls.py",
line 217, in pr2_aspatial
pr = pearsonr(y, predy)[0]
File "/usr/lib/python3/dist-packages/scipy/stats/stats.py", line 3410, in
pearsonr
xmean = x.mean(dtype=dtype)
File "/usr/lib/python3/dist-packages/numpy/core/_methods.py", line 151, in
_mean
ret = umr_sum(arr, axis, dtype, out, keepdims)
TypeError: No loop matching the specified signature and casting was found for
ufunc add
======================================================================
ERROR: test_white (pysal.model.spreg.tests.test_twosls_sparse.TestTSLS)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build/pysal/model/spreg/tests/test_twosls_sparse.py",
line 195, in test_white
reg = TSLS(self.y, self.X, self.yd, self.q, robust='white')
File
"/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build/pysal/model/spreg/twosls.py",
line 458, in __init__
SUMMARY.TSLS(reg=self, vm=vm, w=w, spat_diag=spat_diag)
File
"/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build/pysal/model/spreg/summary_output.py",
line 104, in TSLS
beta_diag(reg, reg.robust)
File
"/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build/pysal/model/spreg/summary_output.py",
line 714, in beta_diag
reg.pr2 = diagnostics_tsls.pr2_aspatial(reg)
File
"/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build/pysal/model/spreg/diagnostics_tsls.py",
line 217, in pr2_aspatial
pr = pearsonr(y, predy)[0]
File "/usr/lib/python3/dist-packages/scipy/stats/stats.py", line 3410, in
pearsonr
xmean = x.mean(dtype=dtype)
File "/usr/lib/python3/dist-packages/numpy/core/_methods.py", line 151, in
_mean
ret = umr_sum(arr, axis, dtype, out, keepdims)
TypeError: No loop matching the specified signature and casting was found for
ufunc add
======================================================================
FAIL: test_filter (pysal.lib.weights.tests.test_adjlist.Test_Adjlist)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build/pysal/lib/weights/tests/test_adjlist.py",
line 38, in test_filter
assert set(alist.focal.unique().tolist()) == set(list(range(4)))
AssertionError
----------------------------------------------------------------------
Ran 1055 tests in 3301.460s
FAILED (SKIP=69, errors=139, failures=1)
E: pybuild pybuild:341: test: plugin distutils failed with: exit code=1: cd
/build/1st/pysal-2.0.0/.pybuild/cpython3_3.8_pysal/build; python3.8 -m nose -v
--verbose
dh_auto_test: error: pybuild --test -i python{version} -p "3.8 3.7" returned
exit code 13
make[1]: *** [debian/rules:19: override_dh_auto_test] Error 25
--- End Message ---
--- Begin Message ---
Source: pysal
Source-Version: 2.1.0-1
We believe that the bug you reported is fixed in the latest version of
pysal, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Bas Couwenberg <[email protected]> (supplier of updated pysal package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 28 Jan 2020 20:10:13 +0100
Source: pysal
Architecture: source
Version: 2.1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian GIS Project <[email protected]>
Changed-By: Bas Couwenberg <[email protected]>
Closes: 950053
Changes:
pysal (2.1.0-1) unstable; urgency=medium
.
* Team upload.
* New upstream release.
(closes: #950053)
* Bump Standards-Version to 4.5.0, no changes.
* Add python3-{deprecated,descartes,tqdm} to (build) dependencies.
* Drop Name field from upstream metadata.
* Add patch to fix test failure with newer numpy.
* Add patch to skip tests expected to fail.
* Skip test target entirely, tends to hang with many defunct processes.
* Drop unused lintian overrides.
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Files:
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