Bug#952203: marked as done (seqan: FTBFS: dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 returned exit code 2)

Debian Bug Tracking System Tue, 03 Mar 2020 01:09:53 -0800

Your message dated Tue, 03 Mar 2020 09:07:25 +0000
with message-id <[email protected]>
and subject line Bug#952203: fixed in seqan 1.4.2+dfsg-4
has caused the Debian Bug report #952203,
regarding seqan: FTBFS: dh_auto_test: error: cd obj-x86_64-linux-gnu && make 
-j4 test ARGS\+=-j4 returned exit code 2
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
952203: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=952203
Debian Bug Tracking System
Contact [email protected] with problems

--- Begin Message ---

Source: seqan
Version: 1.4.2+dfsg-3
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200222 ftbfs-bullseye

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> Running tests...
> /usr/bin/ctest --force-new-ctest-process -j4
> Test project /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
>       Start  1: test_demo_align_align
>       Start  2: test_demo_align_compute_alignment_stats
>       Start  3: test_demo_align_gaps_example
>       Start  4: test_demo_align_global_alignment_banded
>  1/95 Test  #1: test_demo_align_align 
> ..............................................   Passed    0.03 sec
>       Start  5: test_demo_align_global_alignment_unbanded
>  2/95 Test  #2: test_demo_align_compute_alignment_stats 
> ............................   Passed    0.03 sec
>       Start  6: test_demo_align_integrate_align
>  3/95 Test  #4: test_demo_align_global_alignment_banded 
> ............................   Passed    0.03 sec
>       Start  7: test_demo_bam_io_bam_stream
>  4/95 Test  #3: test_demo_align_gaps_example 
> .......................................   Passed    0.03 sec
>       Start  8: test_demo_find_finder_index
>  5/95 Test  #5: test_demo_align_global_alignment_unbanded 
> ..........................   Passed    0.03 sec
>       Start  9: test_demo_find_finder_online
>  6/95 Test  #6: test_demo_align_integrate_align 
> ....................................   Passed    0.03 sec
>       Start 10: test_demo_graph_graph_algo_dijkstra
>  7/95 Test  #7: test_demo_bam_io_bam_stream 
> ........................................   Passed    0.03 sec
>       Start 11: test_demo_graph_algorithms_all_pairs_shortest_path
>  8/95 Test  #8: test_demo_find_finder_index 
> ........................................   Passed    0.03 sec
>       Start 12: test_demo_graph_algorithms_bellman_ford_algorithm
>  9/95 Test  #9: test_demo_find_finder_online 
> .......................................   Passed    0.03 sec
>       Start 13: test_demo_graph_algorithms_breadth_first_search
> 10/95 Test #10: test_demo_graph_graph_algo_dijkstra 
> ................................   Passed    0.03 sec
>       Start 14: test_demo_graph_algorithms_dag_shortest_path
> 11/95 Test #11: test_demo_graph_algorithms_all_pairs_shortest_path 
> .................   Passed    0.03 sec
>       Start 15: test_demo_graph_algorithms_depth_first_search
> 12/95 Test #12: test_demo_graph_algorithms_bellman_ford_algorithm 
> ..................   Passed    0.03 sec
>       Start 16: test_demo_graph_algorithms_dijkstra
> 13/95 Test #13: test_demo_graph_algorithms_breadth_first_search 
> ....................   Passed    0.03 sec
>       Start 17: test_demo_graph_algorithms_floyd_warshall_algorithm
> 14/95 Test #14: test_demo_graph_algorithms_dag_shortest_path 
> .......................   Passed    0.03 sec
>       Start 18: test_demo_graph_algorithms_ford_fulkerson_algorithm
> 15/95 Test #15: test_demo_graph_algorithms_depth_first_search 
> ......................   Passed    0.03 sec
>       Start 19: test_demo_graph_algorithms_kruskals_algorithm
> 16/95 Test #16: test_demo_graph_algorithms_dijkstra 
> ................................   Passed    0.03 sec
>       Start 20: test_demo_graph_algorithms_prims_algorithm
> 17/95 Test #17: test_demo_graph_algorithms_floyd_warshall_algorithm 
> ................   Passed    0.03 sec
>       Start 21: test_demo_graph_algorithms_strongly_connected_components
> 18/95 Test #18: test_demo_graph_algorithms_ford_fulkerson_algorithm 
> ................   Passed    0.03 sec
>       Start 22: test_demo_graph_algorithms_topological_sort
> 19/95 Test #19: test_demo_graph_algorithms_kruskals_algorithm 
> ......................   Passed    0.03 sec
>       Start 23: test_demo_graph_algorithms_transitive_closure
> 20/95 Test #20: test_demo_graph_algorithms_prims_algorithm 
> .........................   Passed    0.03 sec
>       Start 24: test_demo_index_index_begin_atEnd_representative
> 21/95 Test #21: test_demo_graph_algorithms_strongly_connected_components 
> ...........   Passed    0.03 sec
>       Start 25: test_demo_index_index_counting
> 22/95 Test #22: test_demo_graph_algorithms_topological_sort 
> ........................   Passed    0.03 sec
>       Start 26: test_demo_index_index_finder
> 23/95 Test #23: test_demo_graph_algorithms_transitive_closure 
> ......................   Passed    0.03 sec
>       Start 27: 
> test_demo_index_index_getOccurrences_getFrequency_range_getFibre
> 24/95 Test #24: test_demo_index_index_begin_atEnd_representative 
> ...................   Passed    0.03 sec
>       Start 28: test_demo_index_index_iterator
> 25/95 Test #26: test_demo_index_index_finder 
> .......................................   Passed    0.03 sec
>       Start 29: test_demo_index_index_iterator_short
> 26/95 Test #25: test_demo_index_index_counting 
> .....................................   Passed    0.03 sec
>       Start 30: test_demo_index_index_length_countSequences
> 27/95 Test #27: 
> test_demo_index_index_getOccurrences_getFrequency_range_getFibre ...   Passed 
>    0.03 sec
>       Start 31: test_demo_index_index_mummy
> 28/95 Test #28: test_demo_index_index_iterator 
> .....................................   Passed    0.03 sec
>       Start 32: test_demo_index_index_open_save
> 29/95 Test #29: test_demo_index_index_iterator_short 
> ...............................   Passed    0.03 sec
>       Start 33: test_demo_index_index_textAt_indexText_saAt_indexRequire
> 30/95 Test #30: test_demo_index_index_length_countSequences 
> ........................   Passed    0.03 sec
>       Start 34: test_demo_input_output_record_reader
> 31/95 Test #31: test_demo_index_index_mummy 
> ........................................   Passed    0.03 sec
>       Start 35: test_demo_misc_enumerate_strings
> 32/95 Test #32: test_demo_index_index_open_save 
> ....................................   Passed    0.03 sec
>       Start 36: test_demo_modifier_modified_string
> 33/95 Test #33: test_demo_index_index_textAt_indexText_saAt_indexRequire 
> ...........   Passed    0.03 sec
>       Start 37: test_demo_modifier_modified_string_mod_view
> 34/95 Test #35: test_demo_misc_enumerate_strings 
> ...................................   Passed    0.03 sec
>       Start 38: test_demo_modifier_modified_string_nested
> 35/95 Test #34: test_demo_input_output_record_reader 
> ...............................   Passed    0.03 sec
>       Start 39: test_demo_score_score
> 36/95 Test #36: test_demo_modifier_modified_string 
> .................................   Passed    0.03 sec
>       Start 40: test_demo_seeds_seeds_extension
> 37/95 Test #37: test_demo_modifier_modified_string_mod_view 
> ........................   Passed    0.03 sec
>       Start 41: test_demo_seq_io_fai_index_example
> 38/95 Test #38: test_demo_modifier_modified_string_nested 
> ..........................   Passed    0.03 sec
>       Start 42: test_demo_seq_io_sequence_stream_read
> 39/95 Test #39: test_demo_score_score 
> ..............................................   Passed    0.03 sec
>       Start 43: test_demo_sequence_string2
> 40/95 Test #40: test_demo_seeds_seeds_extension 
> ....................................   Passed    0.03 sec
>       Start 44: test_demo_sequence_stringset
> 41/95 Test #41: test_demo_seq_io_fai_index_example 
> .................................   Passed    0.03 sec
>       Start 45: test_test_align
> 42/95 Test #42: test_demo_seq_io_sequence_stream_read 
> ..............................   Passed    0.03 sec
>       Start 46: test_test_arg_parse
> 43/95 Test #43: test_demo_sequence_string2 
> .........................................   Passed    0.03 sec
>       Start 47: test_test_bam_io
> 44/95 Test #44: test_demo_sequence_stringset 
> .......................................   Passed    0.03 sec
>       Start 48: test_test_basic_exception
> 45/95 Test #48: test_test_basic_exception 
> ..........................................   Passed    0.00 sec
>       Start 49: test_test_basic_metaprogramming
> 46/95 Test #45: test_test_align 
> ....................................................   Passed    0.01 sec
>       Start 50: test_test_basic_fundamental
> 47/95 Test #46: test_test_arg_parse 
> ................................................   Passed    0.01 sec
>       Start 51: test_test_basic_concept
> 48/95 Test #49: test_test_basic_metaprogramming 
> ....................................   Passed    0.00 sec
>       Start 52: test_test_basic_alphabet
> 49/95 Test #50: test_test_basic_fundamental 
> ........................................   Passed    0.00 sec
>       Start 53: test_test_basic_aggregate
> 50/95 Test #47: test_test_bam_io 
> ...................................................   Passed    0.01 sec
>       Start 54: test_test_basic_allocator
> 51/95 Test #51: test_test_basic_concept 
> ............................................   Passed    0.00 sec
>       Start 55: test_test_basic_parallelism
> 52/95 Test #52: test_test_basic_alphabet 
> ...........................................   Passed    0.00 sec
>       Start 56: test_test_basic_math
> 53/95 Test #53: test_test_basic_aggregate 
> ..........................................   Passed    0.00 sec
>       Start 57: test_test_basic_smart_pointer
> 54/95 Test #54: test_test_basic_allocator 
> ..........................................   Passed    0.00 sec
>       Start 58: test_test_basic_container
> 55/95 Test #55: test_test_basic_parallelism 
> ........................................   Passed    0.00 sec
>       Start 59: test_test_basic_proxy
> 56/95 Test #56: test_test_basic_math 
> ...............................................   Passed    0.00 sec
>       Start 60: test_test_basic_iterator
> 57/95 Test #57: test_test_basic_smart_pointer 
> ......................................   Passed    0.00 sec
>       Start 61: test_test_consensus
> 58/95 Test #58: test_test_basic_container 
> ..........................................   Passed    0.00 sec
>       Start 62: test_test_file
> 59/95 Test #59: test_test_basic_proxy 
> ..............................................   Passed    0.00 sec
>       Start 63: test_test_find
> 60/95 Test #60: test_test_basic_iterator 
> ...........................................   Passed    0.00 sec
>       Start 64: test_test_gff_io
> 61/95 Test #62: test_test_file 
> .....................................................   Passed    0.00 sec
>       Start 65: test_test_graph_algorithms
> 62/95 Test #64: test_test_gff_io 
> ...................................................   Passed    0.00 sec
>       Start 66: test_test_graph_align
> 63/95 Test #65: test_test_graph_algorithms 
> .........................................   Passed    0.01 sec
>       Start 67: test_test_graph_msa
> 64/95 Test #66: test_test_graph_align 
> ..............................................   Passed    0.00 sec
>       Start 68: test_test_graph_types
> 65/95 Test #61: test_test_consensus 
> ................................................   Passed    0.01 sec
>       Start 69: test_test_index_creation
> 66/95 Test #68: test_test_graph_types 
> ..............................................   Passed    0.00 sec
>       Start 70: test_test_index_crosscompare_char
> 67/95 Test #70: test_test_index_crosscompare_char 
> ..................................   Passed    0.08 sec
>       Start 71: test_test_index_crosscompare_char_dfi
> 68/95 Test #71: test_test_index_crosscompare_char_dfi 
> ..............................   Passed    0.02 sec
>       Start 72: test_test_index_crosscompare_dna
> 69/95 Test #72: test_test_index_crosscompare_dna 
> ...................................   Passed    0.01 sec
>       Start 73: test_test_index_crosscompare_dna_dfi
> 70/95 Test #73: test_test_index_crosscompare_dna_dfi 
> ...............................   Passed    0.00 sec
>       Start 74: test_test_index_qgram
> 71/95 Test #74: test_test_index_qgram 
> ..............................................   Passed    0.00 sec
>       Start 75: test_test_index_sa_bwtwalk
> 72/95 Test #67: test_test_graph_msa 
> ................................................   Passed    0.23 sec
>       Start 76: test_test_index_shapes
> 73/95 Test #76: test_test_index_shapes 
> .............................................   Passed    0.00 sec
>       Start 77: test_test_index_drawing
> 74/95 Test #77: test_test_index_drawing 
> ............................................   Passed    0.00 sec
>       Start 78: test_test_index_fm
> 75/95 Test #63: test_test_find 
> .....................................................   Passed    0.39 sec
>       Start 79: test_test_index_stree_iterators
> 76/95 Test #75: test_test_index_sa_bwtwalk 
> .........................................   Passed    0.27 sec
>       Start 80: test_test_index_repeats
> 77/95 Test #80: test_test_index_repeats 
> ............................................   Passed    0.21 sec
>       Start 81: test_test_map
> 78/95 Test #79: test_test_index_stree_iterators 
> ....................................***Exception: SegFault  0.61 sec
> TEST SUITE test_index
> SEQAN_ENABLE_DEBUG == 1
> SEQAN_ENABLE_TESTING == 1
> SEQAN_ENABLE_CHECKPOINTS == 0
> SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET"
> testEmptyIndex OK
> testIssue509 OK
> testIssue509b OK
>       parentEdgeLabel: 
> a     parentEdgeLabel: a
> aa    parentEdgeLabel: a
> aaacatatz     parentEdgeLabel: acatatz
> aacatatz      parentEdgeLabel: catatz
> aca   parentEdgeLabel: ca
> acaaacatatz   parentEdgeLabel: aacatatz
> acatatz       parentEdgeLabel: tatz
> at    parentEdgeLabel: t
> atatz parentEdgeLabel: atz
> atz   parentEdgeLabel: z
> ca    parentEdgeLabel: ca
> caaacatatz    parentEdgeLabel: aacatatz
> catatz        parentEdgeLabel: tatz
> t     parentEdgeLabel: t
> tatz  parentEdgeLabel: atz
> tz    parentEdgeLabel: z
> z     parentEdgeLabel: z
> 
>   Dir (wotd)
> 0:  0  (LastChild/SENTINELS)
> 1:  2
> 2:  0
> 3:  9
> 4:  6
> 5:  21
> 6:  8
> 7:  23
> 8:  10  (Leaf/Uneval)  (LastChild/SENTINELS)
> 9:  1
> 10:  15
> 11:  2
> 12:  17
> 13:  4  (LastChild/SENTINELS)
> 14:  19
> 15:  2  (Leaf/Uneval)
> 16:  1  (Leaf/Uneval)  (LastChild/SENTINELS)
> 17:  3  (Leaf/Uneval)
> 18:  3  (Leaf/Uneval)  (LastChild/SENTINELS)
> 19:  2  (Leaf/Uneval)
> 20:  5  (Leaf/Uneval)  (LastChild/SENTINELS)
> 21:  2  (Leaf/Uneval)
> 22:  7  (Leaf/Uneval)  (LastChild/SENTINELS)
> 23:  1  (Leaf/Uneval)
> 24:  9  (Leaf/Uneval)  (LastChild/SENTINELS)
> 
>   SA
> 0:  2  aaacatatz
> 1:  3  aacatatz
> 2:  0  acaaacatatz
> 3:  4  acatatz
> 4:  6  atatz
> 5:  8  atz
> 6:  1  caaacatatz
> 7:  5  catatz
> 8:  7  tatz
> 9:  9  tz
> 10:  10  z
> 
> testSTreeIterators_Wotd OK
>       parentEdgeLabel: 
> a     parentEdgeLabel: a
> aca   parentEdgeLabel: ca
> acaaacatatz   parentEdgeLabel: aacatatz
> acatatz       parentEdgeLabel: tatz
> aa    parentEdgeLabel: a
> aaacatatz     parentEdgeLabel: acatatz
> aacatatz      parentEdgeLabel: catatz
> at    parentEdgeLabel: t
> atatz parentEdgeLabel: atz
> atz   parentEdgeLabel: z
> ca    parentEdgeLabel: ca
> caaacatatz    parentEdgeLabel: aacatatz
> catatz        parentEdgeLabel: tatz
> t     parentEdgeLabel: t
> tatz  parentEdgeLabel: atz
> tz    parentEdgeLabel: z
> z     parentEdgeLabel: z
> 
>   Dir (wotd)
> 0:  0  (LastChild/SENTINELS)
> 1:  2
> 2:  0
> 3:  9
> 4:  1
> 5:  21
> 6:  7
> 7:  23
> 8:  10  (Leaf/Uneval)  (LastChild/SENTINELS)
> 9:  1
> 10:  15
> 11:  3
> 12:  17
> 13:  7  (LastChild/SENTINELS)
> 14:  19
> 15:  3  (Leaf/Uneval)
> 16:  7  (Leaf/Uneval)  (LastChild/SENTINELS)
> 17:  4  (Leaf/Uneval)
> 18:  5  (Leaf/Uneval)  (LastChild/SENTINELS)
> 19:  8  (Leaf/Uneval)
> 20:  10  (Leaf/Uneval)  (LastChild/SENTINELS)
> 21:  3  (Leaf/Uneval)
> 22:  7  (Leaf/Uneval)  (LastChild/SENTINELS)
> 23:  8  (Leaf/Uneval)
> 24:  10  (Leaf/Uneval)  (LastChild/SENTINELS)
> 
>   SA
> 0:  4  acatatz
> 1:  5  catatz
> 2:  3  aacatatz
> 3:  7  tatz
> 4:  8  atz
> 5:  10  z
> 6:  3  aacatatz
> 7:  7  tatz
> 8:  8  atz
> 9:  10  z
> 10:  10  z
> 
> testSTreeIterators_WotdOriginal OK
>       parentEdgeLabel: 
> a     parentEdgeLabel: a
> aa    parentEdgeLabel: a
> aaacatatz     parentEdgeLabel: acatatz
> aacatatz      parentEdgeLabel: catatz
> aca   parentEdgeLabel: ca
> acaaacatatz   parentEdgeLabel: aacatatz
> acatatz       parentEdgeLabel: tatz
> at    parentEdgeLabel: t
> atatz parentEdgeLabel: atz
> atz   parentEdgeLabel: z
> ca    parentEdgeLabel: ca
> caaacatatz    parentEdgeLabel: aacatatz
> catatz        parentEdgeLabel: tatz
> t     parentEdgeLabel: t
> tatz  parentEdgeLabel: atz
> tz    parentEdgeLabel: z
> z     parentEdgeLabel: z
> 
>   SA
> 0:  2  aaacatatz
> 1:  3  aacatatz
> 2:  0  acaaacatatz
> 3:  4  acatatz
> 4:  6  atatz
> 5:  8  atz
> 6:  1  caaacatatz
> 7:  5  catatz
> 8:  7  tatz
> 9:  9  tz
> 10:  10  z
> 
>   LCP
> 0:  2
> 1:  1
> 2:  3
> 3:  1
> 4:  2
> 5:  0
> 6:  2
> 7:  0
> 8:  1
> 9:  0
> 10:  0
> 
>   Childtab
> 0:  6
> 1:  1
> 2:  4
> 3:  3
> 4:  5
> 5:  2
> 6:  8
> 7:  7
> 8:  10
> 9:  9
> 10:  11
> 
> testSTreeIterators_Esa OK
> testFind_Esa_Mlr OK
> testCompareIndices_Esa_Wotd OK
> BottomUp without empty edges
> 1     AC      
> 2     AC      
> 1     C       
> 2     C       
> 
> BottomUp with empty edges
> 1     AC      
> 1     AC      
> 2     AC      
> 1     C       
> 1     C       
> 2     C       
> 
> TopDown postorder without empty edges
> 2     AC      
> 2     C       
> 4             
> 
> TopDown postorder with empty edges
> 1     AC      
> 1     AC      
> 2     AC      
> 1     C       
> 1     C       
> 2     C       
> 4             
> 
> TopDown preorder without empty edges
> 2     C       
> 
> TopDown preorder with empty edges
> 4             
> 2     AC      
> 1     AC      
> 1     AC      
> 2     C       
> 1     C       
> 1     C       
> 
> TopDown with empty edges
> 4             
> 2     AC      
> 
> TopDown with empty edges
> 4             
> 2     AC      
> 1     AC      
> testMultiIndex OK
> 
> 
> stack trace:
>   0    [0x55fc80c8cda9]  
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/bin/test_index_stree_iterators(+0x48da9)
>   1    [0x7f00d04bafe0]  /lib/x86_64-linux-gnu/libc.so.6(+0x39fe0)
>   2    [0x55fc80d27f2e]  seqan::_skew7ExtendComp<seqan::Triple<unsigned long, 
> seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, 
> int>::operator()(seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, 
> void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, 
> seqan::Tag<seqan::Pack_> > const&, seqan::Triple<unsigned long, 
> seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > const&) const + 0x2e
>   3    [0x55fc80d286b7]  void std::__insertion_sort<seqan::Triple<unsigned 
> long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*, 
> __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned
>  long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > > 
> >(seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, 
> seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, 
> seqan::Tag<seqan::Pack_> >*, seqan::Triple<unsigned long, 
> seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*, 
> __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned
>  long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >) + 0x67
>   4    [0x55fc80d2d7b5]  
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/bin/test_index_stree_iterators(+0xe97b5)
>   5    [0x55fc80d4fd0b]  bool 
> seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, 
> seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned
>  long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned 
> long, seqan::File<seqan::Async<void> > > > >, 
> seqan::Filter<seqan::filterI2<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, unsigned long> > >, 
> seqan::Skew7>::process<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, 
> unsigned long, seqan::Tag<seqan::Pack_> >, 
> seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned
>  long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned 
> long, seqan::File<seqan::Async<void> > > > >, 
> seqan::Filter<seqan::filterI2<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, unsigned long> > > 
> >(seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, 
> seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned
>  long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned 
> long, seqan::File<seqan::Async<void> > > > >, 
> seqan::Filter<seqan::filterI2<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, unsigned long> > >&) + 0x72b
>   6    [0x55fc80d52823]  
> seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, 
> seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned
>  long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned 
> long, seqan::File<seqan::Async<void> > > > >, 
> seqan::Filter<seqan::filterI2<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, unsigned long> > >, 
> seqan::Skew7>::Pipe(seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, 
> unsigned long, seqan::Tag<seqan::Pack_> >, 
> seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned
>  long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned 
> long, seqan::File<seqan::Async<void> > > > >, 
> seqan::Filter<seqan::filterI2<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, unsigned long> > >&) + 0x6a3
>   7    [0x55fc80d66bf9]  bool 
> seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<void> >, 
> seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> 
> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> > 
> > >::process<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<void> 
> >, seqan::Source<void> >, seqan::Caster<unsigned char, 
> seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<char, 
> seqan::Alloc<void> >, seqan::Source<void> >, seqan::Caster<unsigned char, 
> seqan::CasterReinterpret> >&) + 0xb79
>   8    [0x55fc80d67609]  
> seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<void> >, 
> seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> 
> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> > 
> > >::Pipe<seqan::String<unsigned long, seqan::Alloc<void> > 
> >(seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<void> >, 
> seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> 
> >&, seqan::String<unsigned long, seqan::Alloc<void> > const&, 
> seqan::EnableIf<seqan::IsSameType<seqan::String<unsigned long, 
> seqan::Alloc<void> >, seqan::String<unsigned long, seqan::Alloc<void> > >, 
> void>::Type*) + 0x609
>   9    [0x55fc80c95960]  
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/bin/test_index_stree_iterators(+0x51960)
>  10    [0x55fc80d676c0]  void 
> seqan::_indexRequireBottomUpIteration<seqan::StringSet<seqan::String<char, 
> seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, 
> void>(seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, 
> seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexEsa<void> >&) + 0x70
>  11    [0x55fc80d67a7f]  void seqan::SEQAN_TEST_testMUMs<true>() + 0x2ff
>  12    [0x55fc80c89a6a]  main + 0x1da
>  13    [0x7f00d04a7bbb]  __libc_start_main + 0xeb
>  14    [0x55fc80c89c8a]  _start + 0x2a
> 
> 
>       Start 82: test_test_misc
> 79/95 Test #82: test_test_misc 
> .....................................................   Passed    0.01 sec
>       Start 83: test_test_misc_cmdparser
> 80/95 Test #83: test_test_misc_cmdparser 
> ...........................................   Passed    0.00 sec
>       Start 84: test_test_modifier
> 81/95 Test #84: test_test_modifier 
> .................................................   Passed    0.00 sec
>       Start 85: test_test_parallel
> 82/95 Test #85: test_test_parallel 
> .................................................   Passed    0.02 sec
>       Start 86: test_test_pipe
> 83/95 Test #81: test_test_map 
> ......................................................   Passed    0.51 sec
>       Start 87: test_test_random
> 84/95 Test #87: test_test_random 
> ...................................................   Passed    0.02 sec
>       Start 88: test_test_score
> 85/95 Test #88: test_test_score 
> ....................................................   Passed    0.01 sec
>       Start 89: test_test_seeds
> 86/95 Test #89: test_test_seeds 
> ....................................................   Passed    0.04 sec
>       Start 90: test_test_seq_io
> 87/95 Test #90: test_test_seq_io 
> ...................................................   Passed    0.02 sec
>       Start 91: test_test_sequence
> 88/95 Test #91: test_test_sequence 
> .................................................   Passed    0.01 sec
>       Start 92: test_test_sequence_journaled
> 89/95 Test #92: test_test_sequence_journaled 
> .......................................   Passed    0.03 sec
>       Start 93: test_test_store
> 90/95 Test #93: test_test_store 
> ....................................................   Passed    0.33 sec
>       Start 94: test_test_stream
> 91/95 Test #86: test_test_pipe 
> .....................................................   Passed    0.64 sec
>       Start 95: test_test_find_swift
> 92/95 Test #95: test_test_find_swift 
> ...............................................   Passed    0.00 sec
> 93/95 Test #94: test_test_stream 
> ...................................................   Passed    5.13 sec
> 94/95 Test #69: test_test_index_creation 
> ...........................................   Passed    8.57 sec
> 95/95 Test #78: test_test_index_fm 
> .................................................***Exception: SegFault 10.70 
> sec
> TEST SUITE test_fm_index_beta
> SEQAN_ENABLE_DEBUG == 1
> SEQAN_ENABLE_TESTING == 1
> SEQAN_ENABLE_CHECKPOINTS == 0
> SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET"
> test_rsbs_defaultConstructor OK
> test_rsbs_resize OK
> test_rsbs_getBuPos OK
> test_rsbs_getSBuPos OK
> test_rsbs_getPosInBu OK
> test_rsbs_isBitSet OK
> test_rsbs_append_value OK
> test_rsbs_rank OK
> test_rsbs_update_ranks_ OK
> test_rsbs_constructor OK
> test_rsbs_equalOperator OK
> test_rsbs_assignOperator OK
> test_rsbs_open_save OK
> test_rsbs_iterator_get_value OK
> prefix_sum_table_constructor OK
> prefix_sum_table_get_alphabet_size OK
> prefix_sum_table_get_character_position OK
> prefix_sum_table_get_character OK
> prefix_sum_table_determine_sentinel_substitute OK
> prefix_sum_table_get_pivot_position OK
> prefix_sum_table_prefix_sum OK
> prefix_sum_table_get_value OK
> prefix_sum_table_length OK
> prefix_sum_table_insert_sentinel_ OK
> prefix_sum_table_resize OK
> prefix_sum_table_set_prefix_sum OK
> prefix_sum_table_value OK
> prefix_sum_table_open_save OK
> wavelet_tree_structure_constructor OK
> wavelet_tree_structure_clear OK
> wavelet_tree_structure_empty OK
> wavelet_tree_structure_get_fibre OK
> wavelet_tree_structure_length OK
> wavelet_tree_structure_resize OK
> wavelet_tree_structure_open_save OK
> wavelet_tree_structure_iterator_begin OK
> wavelet_tree_structure_iterator_container OK
> wavelet_tree_structure_iterator_end OK
> wavelet_tree_structure_iterator_get_character OK
> wavelet_tree_structure_iterator_get_child_pos OK
> wavelet_tree_structure_iterator_get_num_child_vertices OK
> wavelet_tree_structure_iterator_get_position OK
> wavelet_tree_structure_iterator_go_child OK
> wavelet_tree_structure_iterator_go_down OK
> wavelet_tree_structure_iterator_go_right OK
> wavelet_tree_structure_iterator_go_to_position OK
> wavelet_tree_structure_iterator_go_up OK
> wavelet_tree_structure_iterator_is_leaf OK
> wavelet_tree_structure_iterator_is_root OK
> wavelet_tree_structure_iterator_set_and_go_right OK
> wavelet_tree_structure_iterator_set_character OK
> wavelet_tree_structure_iterator_set_child_vertices_ OK
> wavelet_tree_structure_iterator_set_left_child_pos_ OK
> wavelet_tree_structure_iterator_set_position_ OK
> wavelet_tree_structure_iterator_set_right_child_pos_ OK
> sparse_string_get_value OK
> sparse_string_clear_length_resize OK
> sparse_string_empty OK
> sparse_string_get_fibre OK
> compressed_sa_clear_length_resize OK
> compressed_sa_empty OK
> compressed_sa_create_compressed_sa OK
> compressed_sa_get_fibre OK
> compressed_sa_get_next_pos_ OK
> compressed_sa_set_lf_table OK
> compressed_sa_value_access OK
> compressed_sa_open_save OK
> compressed_sa_iterator_begin OK
> compressed_sa_iterator_end OK
> test_lf_table_lf_mapping OK
> test_fm_index_constructor OK
> test_fm_index_clear OK
> test_fm_index_determine_sentinel_substitute_ OK
> test_fm_index_empty OK
> test_fm_index_find_first_index_ OK
> test_fm_index_get_fibre OK
> 
> 
> stack trace:
>   0    [0x55eb2e19af09]  
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/bin/test_index_fm(+0xc5f09)
>   1    [0x7fadd258dfe0]  /lib/x86_64-linux-gnu/libc.so.6(+0x39fe0)
>   2    [0x55eb2e32901e]  seqan::_skew7ExtendComp<seqan::Triple<unsigned long, 
> seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, 
> int>::operator()(seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, 
> void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, 
> seqan::Tag<seqan::Pack_> > const&, seqan::Triple<unsigned long, 
> seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > const&) const + 0x2e
>   3    [0x55eb2e329c95]  void std::__introsort_loop<seqan::Triple<unsigned 
> long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*, long, 
> __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned
>  long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > > 
> >(seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, 
> seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, 
> seqan::Tag<seqan::Pack_> >*, seqan::Triple<unsigned long, 
> seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*, long, 
> __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned
>  long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, 
> seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >) + 0x65
>   4    [0x55eb2e32d6fe]  
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/bin/test_index_fm(+0x2586fe)
>   5    [0x55eb2e3874a7]  bool 
> seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, 
> seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned
>  long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned 
> long, seqan::File<seqan::Async<void> > > > >, 
> seqan::Filter<seqan::filterI2<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, unsigned long> > >, 
> seqan::Skew7>::process<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, 
> unsigned long, seqan::Tag<seqan::Pack_> >, 
> seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned
>  long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned 
> long, seqan::File<seqan::Async<void> > > > >, 
> seqan::Filter<seqan::filterI2<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, unsigned long> > > 
> >(seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, 
> seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned
>  long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned 
> long, seqan::File<seqan::Async<void> > > > >, 
> seqan::Filter<seqan::filterI2<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, unsigned long> > >&) + 0x4f7
>   6    [0x55eb2e388673]  
> seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, 
> seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned
>  long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned 
> long, seqan::File<seqan::Async<void> > > > >, 
> seqan::Filter<seqan::filterI2<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, unsigned long> > >, 
> seqan::Skew7>::Pipe(seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, 
> unsigned long, seqan::Tag<seqan::Pack_> >, 
> seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned
>  long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned 
> long, seqan::File<seqan::Async<void> > > > >, 
> seqan::Filter<seqan::filterI2<seqan::Pair<unsigned long, unsigned long, 
> seqan::Tag<seqan::Pack_> >, unsigned long> > >&) + 0x6a3
>   7    [0x55eb2e389259]  bool 
> seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned
>  char, seqan::Dna_>, seqan::Alloc<void> >, 
> seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, 
> seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, 
> seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned 
> long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, 
> seqan::Alloc<void> > > 
> >::process<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned
>  char, seqan::Dna_>, seqan::Alloc<void> >, 
> seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, 
> seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, 
> seqan::CasterReinterpret> > 
> >(seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned
>  char, seqan::Dna_>, seqan::Alloc<void> >, 
> seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, 
> seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, 
> seqan::CasterReinterpret> >&) + 0xb99
>   8    [0x55eb2e389e1f]  
> seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned
>  char, seqan::Dna_>, seqan::Alloc<void> >, 
> seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, 
> seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, 
> seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned 
> long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, 
> seqan::Alloc<void> > > >::Pipe<seqan::String<unsigned long, 
> seqan::Alloc<void> > 
> >(seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned
>  char, seqan::Dna_>, seqan::Alloc<void> >, 
> seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, 
> seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, 
> seqan::CasterReinterpret> >&, seqan::String<unsigned long, seqan::Alloc<void> 
> > const&, seqan::EnableIf<seqan::IsSameType<seqan::String<unsigned long, 
> seqan::Alloc<void> >, seqan::String<unsigned long, seqan::Alloc<void> > >, 
> void>::Type*) + 0x5cf
>   9    [0x55eb2e1a6e44]  
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/bin/test_index_fm(+0xd1e44)
>  10    [0x55eb2e393917]  void 
> fmIndexSearch<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, 
> seqan::Dna_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> 
> > >, seqan::WT<void>, 
> void>(seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned 
> char, seqan::Dna_>, seqan::Alloc<void> >, 
> seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::FMIndex<seqan::WT<void>, 
> void> >) + 0x27b7
>  11    [0x55eb2e3b7c22]  void SEQAN_TEST_test_fm_index_search<true>() + 0x482
>  12    [0x55eb2e1915d1]  main + 0xfd1
>  13    [0x7fadd257abbb]  __libc_start_main + 0xeb
>  14    [0x55eb2e191d6a]  _start + 0x2a
> 
> 
> 
> 98% tests passed, 2 tests failed out of 95
> 
> Total Test time (real) =  11.33 sec
> 
> The following tests FAILED:
>        78 - test_test_index_fm (SEGFAULT)
>        79 - test_test_index_stree_iterators (SEGFAULT)
> Errors while running CTest
> make[2]: *** [Makefile:87: test] Error 8
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 
> returned exit code 2

The full build log is available from:
   http://qa-logs.debian.net/2020/02/22/seqan_1.4.2+dfsg-3_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.

--- End Message ---

--- Begin Message ---

Source: seqan
Source-Version: 1.4.2+dfsg-4
Done: [email protected] (Michael R. Crusoe)

We believe that the bug you reported is fixed in the latest version of
seqan, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated seqan package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Mon, 02 Mar 2020 14:48:29 +0100
Source: seqan
Architecture: source
Version: 1.4.2+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Closes: 943260 952203
Changes:
 seqan (1.4.2+dfsg-4) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Andreas Tille ]
   * Use 2to3 to port from Python2 to Python3
     Closes: #943260
   * debhelper-compat 12
   * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
   * Remove trailing whitespace in debian/changelog
   * Remove trailing whitespace in debian/copyright
   * Set upstream metadata fields: Bug-Database.
   * Remove obsolete fields Contact, Name from debian/upstream/metadata.
   * Rely on pre-initialized dpkg-architecture variables.
 .
   [ Michael R. Crusoe ]
   * Skip some broken tests (Closes: #952203)
   * Finished the Python3 conversion for demo_checker.py
   * Mark seqan-dev as Multi-Arch: foreign
   * Standards-Version: 4.5.0
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 92ac18b38eefb9e5263ed33fca31d897ded5b8ae 30828 seqan_1.4.2+dfsg-4.debian.tar.xz
 2183447798b8bdc30f91a073f72a1940688fb5f8 7152 
seqan_1.4.2+dfsg-4_source.buildinfo
Checksums-Sha256:
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seqan_1.4.2+dfsg-4.dsc
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seqan_1.4.2+dfsg-4.debian.tar.xz
 ed4d838a727b7daa3c95fede0efc10196ca22f777d342f82f4558e99b5759af5 7152 
seqan_1.4.2+dfsg-4_source.buildinfo
Files:
 95b0f0c3218efd2f5d17b607b07d93dd 2063 science optional seqan_1.4.2+dfsg-4.dsc
 6d229190cd0769ef35bb48f3700f570e 30828 science optional 
seqan_1.4.2+dfsg-4.debian.tar.xz
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--- End Message ---

Bug#952203: marked as done (seqan: FTBFS: dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 returned exit code 2)

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