Bug#813981: marked as done (pyentropy: FTBFS: ndexError: invalid slice)

Mon, 13 Apr 2020 19:52:04 -0700 

Your message dated Tue, 14 Apr 2020 02:46:52 +0000
with message-id <e1jobba-000f5n...@fasolo.debian.org>
and subject line Bug#956603: Removed package(s) from unstable
has caused the Debian Bug report #813981,
regarding pyentropy: FTBFS: ndexError: invalid slice
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
813981: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=813981
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message --- 
Source: pyentropy
Version: 0.4.1-2
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org

Dear Maintainer,

pyentropy fails to build from source in unstable/amd64:

  [..]

  ======================================================================
  ERROR: pyentropy.tests.test_systems.test_1d_qe('qe', 'plugin')
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
      self.test(*self.arg)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/tests/test_systems.py",
 line 61, in do_1d_check
      s.calculate_entropies(method=method, calc=allcalc, qe_method=qe_method)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/systems.py",
 line 252, in calculate_entropies
      self._qe_ent(qe_method,sampling,methods)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/systems.py",
 line 370, in _qe_ent
      sys = self._subsampled_instance(sl)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/systems.py",
 line 595, in _subsampled_instance
      return DiscreteSystem(self.X[:,sl], self.X_dims,
  IndexError: invalid slice
  
  ======================================================================
  ERROR: pyentropy.tests.test_systems.test_1d_qe_pt('qe', 'pt')
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
      self.test(*self.arg)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/tests/test_systems.py",
 line 61, in do_1d_check
      s.calculate_entropies(method=method, calc=allcalc, qe_method=qe_method)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/systems.py",
 line 252, in calculate_entropies
      self._qe_ent(qe_method,sampling,methods)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/systems.py",
 line 370, in _qe_ent
      sys = self._subsampled_instance(sl)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/systems.py",
 line 595, in _subsampled_instance
      return DiscreteSystem(self.X[:,sl], self.X_dims,
  IndexError: invalid slice
  
  ======================================================================
  ERROR: pyentropy.tests.test_systems.test_1d_plugin_sorted('plugin', None)
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 267, in setUp
      try_run(self.test, names)
    File "/usr/lib/python2.7/dist-packages/nose/util.py", line 471, in try_run
      return func()
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/tests/test_systems.py",
 line 98, in setup_1d_sorted
      xs[start:end] = oce
  IndexError: invalid slice
  
  ======================================================================
  ERROR: pyentropy.tests.test_systems.test_1d_pt_sorted('pt', None)
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 267, in setUp
      try_run(self.test, names)
    File "/usr/lib/python2.7/dist-packages/nose/util.py", line 471, in try_run
      return func()
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/tests/test_systems.py",
 line 98, in setup_1d_sorted
      xs[start:end] = oce
  IndexError: invalid slice
  
  ======================================================================
  ERROR: pyentropy.tests.test_systems.test_1d_qe_sorted('qe', 'plugin')
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 267, in setUp
      try_run(self.test, names)
    File "/usr/lib/python2.7/dist-packages/nose/util.py", line 471, in try_run
      return func()
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/tests/test_systems.py",
 line 98, in setup_1d_sorted
      xs[start:end] = oce
  IndexError: invalid slice
  
  ======================================================================
  ERROR: pyentropy.tests.test_systems.test_1d_qe_pt_sorted('qe', 'pt')
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 267, in setUp
      try_run(self.test, names)
    File "/usr/lib/python2.7/dist-packages/nose/util.py", line 471, in try_run
      return func()
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/tests/test_systems.py",
 line 98, in setup_1d_sorted
      xs[start:end] = oce
  IndexError: invalid slice
  
  ======================================================================
  ERROR: pyentropy.tests.test_systems.test_toy1_sorted
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
      self.test(*self.arg)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/tests/test_systems.py",
 line 165, in test_toy1_sorted
      s.calculate_entropies(method='plugin', calc=toycalc)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/systems.py",
 line 256, in calculate_entropies
      self._calc_ents(method, sampling, methods)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/systems.py",
 line 29, in _calc_ents
      self._sample(method=sampling)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/systems.py",
 line 714, in _sample
      oce = d_X[indx]
  IndexError: invalid slice
  
  ======================================================================
  FAIL: pyentropy.tests.test_systems.test_toy1
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
      self.test(*self.arg)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/tests/test_systems.py",
 line 160, in test_toy1
      assert_array_almost_equal(v, toytrue)
    File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 912, 
in assert_array_almost_equal
      precision=decimal)
    File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 733, 
in assert_array_compare
      raise AssertionError(msg)
  AssertionError: 
  Arrays are not almost equal to 6 decimals
  
  (mismatch 33.3333333333%)
   x: array([ 2.251629,  1.584963,  2.169925,  3.141604,  2.567168,  3.421554])
   y: array([ 2.251629,  1.584963,  2.169925,  2.836592,  2.947703,  3.421554])
  
  ======================================================================
  FAIL: pyentropy.tests.test_utils.test_dec2base_1d
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
      self.test(*self.arg)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/tests/test_utils.py",
 line 65, in test_dec2base_1d
      assert_equal(dec2base(x,3,4),y)
    File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 316, 
in assert_equal
      return assert_array_equal(actual, desired, err_msg, verbose)
    File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 807, 
in assert_array_equal
      verbose=verbose, header='Arrays are not equal')
    File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 733, 
in assert_array_compare
      raise AssertionError(msg)
  AssertionError: 
  Arrays are not equal
  
  (mismatch 9.25925925926%)
   x: array([[0, 0, 0, 0],
         [0, 0, 0, 1],
         [0, 0, 0, 2],...
   y: array([[0, 0, 0, 0],
         [0, 0, 0, 1],
         [0, 0, 0, 2],...
  
  ======================================================================
  FAIL: pyentropy.tests.test_utils.test_dec2base_2d
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
      self.test(*self.arg)
    File 
"/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1/pyentropy/tests/test_utils.py",
 line 68, in test_dec2base_2d
      assert_equal(dec2base(x2,3,4),y)
    File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 316, 
in assert_equal
      return assert_array_equal(actual, desired, err_msg, verbose)
    File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 807, 
in assert_array_equal
      verbose=verbose, header='Arrays are not equal')
    File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 733, 
in assert_array_compare
      raise AssertionError(msg)
  AssertionError: 
  Arrays are not equal
  
  (mismatch 9.25925925926%)
   x: array([[0, 0, 0, 0],
         [0, 0, 0, 1],
         [0, 0, 0, 2],...
   y: array([[0, 0, 0, 0],
         [0, 0, 0, 1],
         [0, 0, 0, 2],...
  
  ----------------------------------------------------------------------
  Ran 29 tests in 0.167s
  
  FAILED (errors=7, failures=3)
  Order 1 complete. Time: Sun Feb  7 10:30:03 2016
  Order 2 complete. Time: Sun Feb  7 10:30:03 2016
  Order 3 complete. Time: Sun Feb  7 10:30:03 2016
  order: 1 ierr: 1 - The solution converged.
  fval: 1.16850048156e-12 nfev: 9 njev: 1
  order: 1 ierr: 1 - The solution converged.
  fval: 1.16850048156e-12 nfev: 9 njev: 1
  debian/rules:13: recipe for target 'override_dh_auto_test' failed
  make[1]: *** [override_dh_auto_test] Error 1
  make[1]: Leaving directory 
'/home/lamby/temp/cdt.20160207102950.HNDuxkvewQ/pyentropy-0.4.1'
  debian/rules:6: recipe for target 'build' failed
  make: *** [build] Error 2

  [..]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      la...@debian.org / chris-lamb.co.uk
       `-

Attachment: pyentropy.0.4.1-2.unstable.amd64.log.txt.gz
Description: Binary data


--- End Message ---
--- Begin Message --- 
Version: 0.4.1-2+rm

Dear submitter,

as the package pyentropy has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/956603

The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.

Please note that the changes have been done on the master archive and
will not propagate to any mirrors until the next dinstall run at the
earliest.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmas...@ftp-master.debian.org.

Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)

--- End Message ---

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