Your message dated Thu, 30 Jul 2020 16:15:03 +0000
with message-id <[email protected]>
and subject line Bug#957542: fixed in minc-tools 2.3.00+dfsg-4
has caused the Debian Bug report #957542,
regarding minc-tools: ftbfs with GCC-10
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
957542: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957542
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:minc-tools
Version: 2.3.00+dfsg-3
Severity: normal
Tags: sid bullseye
User: [email protected]
Usertags: ftbfs-gcc-10
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-10/g++-10, but succeeds to build with gcc-9/g++-9. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.
The full build log can be found at:
http://people.debian.org/~doko/logs/gcc10-20200225/minc-tools_2.3.00+dfsg-3_unstable_gcc10.log
The last lines of the build log are at the end of this report.
To build with GCC 10, either set CC=gcc-10 CXX=g++-10 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-10/porting_to.html
[...]
make -f conversion/CMakeFiles/upet2mnc.dir/build.make
conversion/CMakeFiles/upet2mnc.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends
"Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/conversion
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake
--color=
Scanning dependencies of target upet2mnc
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f conversion/CMakeFiles/upet2mnc.dir/build.make
conversion/CMakeFiles/upet2mnc.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 89%] Building C object
conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/conversion/Acr_nema
-I/usr/include/nifti -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o
CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c
/<<PKGBUILDDIR>>/conversion/micropet/upet2mnc.c
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 89%] Built target nii2mnc
[ 89%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/conversion/Acr_nema
-I/usr/include/nifti -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o
CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c
/<<PKGBUILDDIR>>/conversion/Acr_nema/file_io.c
/<<PKGBUILDDIR>>/conversion/micropet/upet2mnc.c:419:36: warning: macro
"__DATE__" might prevent reproducible builds [-Wdate-time]
419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL},
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/conversion/micropet/upet2mnc.c:16:38: warning: macro
"__TIME__" might prevent reproducible builds [-Wdate-time]
16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/conversion/micropet/upet2mnc.c:419:36: note: in expansion of
macro ‘VERSIONSTR’
419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL},
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/conversion/micropet/upet2mnc.c: In function ‘upet_to_minc’:
/<<PKGBUILDDIR>>/conversion/micropet/upet2mnc.c:537:19: warning: macro
"__DATE__" might prevent reproducible builds [-Wdate-time]
537 | argv_tmp[1] = VERSIONSTR;
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/conversion/micropet/upet2mnc.c:16:38: warning: macro
"__TIME__" might prevent reproducible builds [-Wdate-time]
16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/conversion/micropet/upet2mnc.c:537:19: note: in expansion of
macro ‘VERSIONSTR’
537 | argv_tmp[1] = VERSIONSTR;
| ^~~~~~~~~~
[ 90%] Linking C executable minctoecat
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E
cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now
-Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic
CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o
CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o
CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -lminc2
-lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2
-lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2
-lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread
-lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
/usr/bin/ld:
CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o:./obj-x86_64-linux-gnu/conversion/./conversion/minctoecat/ecat_write.h:42:
multiple definition of `matrix_errno';
CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o:./obj-x86_64-linux-gnu/conversion/./conversion/minctoecat/ecat_write.h:42:
first defined here
/usr/bin/ld:
CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o:./obj-x86_64-linux-gnu/conversion/./conversion/minctoecat/ecat_write.h:44:
multiple definition of `matrix_errtxt';
CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o:./obj-x86_64-linux-gnu/conversion/./conversion/minctoecat/ecat_write.h:44:
first defined here
/usr/bin/ld:
CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o:./obj-x86_64-linux-gnu/conversion/./conversion/minctoecat/ecat_write.h:44:
multiple definition of `matrix_errtxt';
CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o:./obj-x86_64-linux-gnu/conversion/./conversion/minctoecat/ecat_write.h:44:
first defined here
/usr/bin/ld:
CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o:./obj-x86_64-linux-gnu/conversion/./conversion/minctoecat/ecat_write.h:42:
multiple definition of `matrix_errno';
CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o:./obj-x86_64-linux-gnu/conversion/./conversion/minctoecat/ecat_write.h:42:
first defined here
[ 91%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/conversion/Acr_nema
-I/usr/include/nifti -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o
CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c
/<<PKGBUILDDIR>>/conversion/Acr_nema/globals.c
[ 92%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/conversion/Acr_nema
-I/usr/include/nifti -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o
CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c
/<<PKGBUILDDIR>>/conversion/Acr_nema/group.c
collect2: error: ld returned 1 exit status
make[3]: *** [conversion/CMakeFiles/minctoecat.dir/build.make:147:
conversion/minctoecat] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:2110:
conversion/CMakeFiles/minctoecat.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
[ 93%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/conversion/Acr_nema
-I/usr/include/nifti -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o
CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -c
/<<PKGBUILDDIR>>/conversion/Acr_nema/message.c
[ 93%] Linking C executable upet2mnc
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E
cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now
-Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic
CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -lminc2 -lhdf5
-lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt
-lnetcdf
[ 93%] Building C object
conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/conversion/Acr_nema
-I/usr/include/nifti -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o
CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -c
/<<PKGBUILDDIR>>/conversion/Acr_nema/value_repr.c
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 93%] Built target upet2mnc
[ 94%] Linking C static library libacr_nema.a
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -P
CMakeFiles/acr_nema.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E
cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1
/usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o
CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o
CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o
CMakeFiles/acr_nema.dir/Acr_nema/element.c.o
CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o
CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o
CMakeFiles/acr_nema.dir/Acr_nema/group.c.o
CMakeFiles/acr_nema.dir/Acr_nema/message.c.o
CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o
/usr/bin/ranlib libacr_nema.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 94%] Built target acr_nema
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:166: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install
--strip-program=true" returned exit code 2
make: *** [debian/rules:22: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: minc-tools
Source-Version: 2.3.00+dfsg-4
Done: Nilesh Patra <[email protected]>
We believe that the bug you reported is fixed in the latest version of
minc-tools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <[email protected]> (supplier of updated minc-tools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 30 Jul 2020 19:48:45 +0530
Source: minc-tools
Architecture: source
Version: 2.3.00+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Nilesh Patra <[email protected]>
Closes: 957542
Changes:
minc-tools (2.3.00+dfsg-4) unstable; urgency=medium
.
* Team Upload.
* Fix gcc-10 FTBFS (Closes: #957542)
* Add upstream/metadata
* Remove compat, switch to debhelper-compat version 13
* standards-version: 4.5.0
* Add "Rules-Requires-Root: no"
* Add manpages
Checksums-Sha1:
a3a759d78eb90d3ac0d825e73ed3807382676270 2181 minc-tools_2.3.00+dfsg-4.dsc
b65b7adb0e87055d0758604af7d3752a42b1ea11 13680
minc-tools_2.3.00+dfsg-4.debian.tar.xz
aec4e5039226e777b13c1470ef7728c1f1f422e9 8886
minc-tools_2.3.00+dfsg-4_amd64.buildinfo
Checksums-Sha256:
0772383d1bca9c4fb16e7d1d9f26010496a1381699c66f0ffb9d0c17a125d220 2181
minc-tools_2.3.00+dfsg-4.dsc
06c13d0ab7328357eb16932490686f5a8c62e3cae831786e8ccaafa3886cce81 13680
minc-tools_2.3.00+dfsg-4.debian.tar.xz
f2b089633361cc5552324e7838fefdf20d09f2bcf5c73d98331787cc393d9888 8886
minc-tools_2.3.00+dfsg-4_amd64.buildinfo
Files:
412d8cbc2cd3943287c1401a45e0109f 2181 science optional
minc-tools_2.3.00+dfsg-4.dsc
51caabb79f9af32373d40a863883afbd 13680 science optional
minc-tools_2.3.00+dfsg-4.debian.tar.xz
bb03519dc5e44a3d557958999dda6c67 8886 science optional
minc-tools_2.3.00+dfsg-4_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=Z0Xe
-----END PGP SIGNATURE-----
--- End Message ---