Your message dated Sun, 02 Aug 2020 08:43:00 +0000
with message-id <[email protected]>
and subject line Bug#966191: fixed in cufflinks 2.2.1+dfsg.1-8
has caused the Debian Bug report #966191,
regarding cufflinks: FTBFS with GCC 10: multiple definition of ... due to
-fno-common
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
966191: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966191
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: cufflinks
Version: 2.2.1+dfsg.1-7
Severity: serious
Tags: ftbfs
Justification: fails to build from source (but built successfully in the past)
User: [email protected]
Usertags: ftbfs-gcc-10
Hi,
cufflinks started to FTBFS when GCC 10 was made the default compiler:
g++ -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wunused -Wuninitialized
-ftemplate-depth-1024 -O3 -g -O2
-fdebug-prefix-map=/build/cufflinks-2.2.1+dfsg.1=. -fstack-protector-strong
-Wformat -Werror=format-security -DNDEBUG -pthread -I/usr/include -Wl,-z,rel
ro -Wl,-z,now -L/usr/lib -Wl,-z,relro -Wl,-z,now -o cufflinks cufflinks.o
libcufflinks.a libgc.a -lbam -lz -lboost_system -lboost_thread
-lboost_serialization
/usr/bin/ld: libcufflinks.a(c_plot.o):./src/locfit/c_plot.c:12: multiple
definition of `curwin'; libcufflinks.a(startlf.o):./src/locfit/startlf.c:236:
first defined here
More information about the corresponding GCC change can be found here:
https://gcc.gnu.org/gcc-10/porting_to.html
"Default to -fno-common"
Andreas
--- End Message ---
--- Begin Message ---
Source: cufflinks
Source-Version: 2.2.1+dfsg.1-8
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
cufflinks, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated cufflinks package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 02 Aug 2020 10:02:34 +0200
Source: cufflinks
Binary: cufflinks cufflinks-dbgsym
Architecture: source amd64
Version: 2.2.1+dfsg.1-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
cufflinks - Transcript assembly, differential expression and regulation for R
Closes: 966191
Changes:
cufflinks (2.2.1+dfsg.1-8) unstable; urgency=medium
.
[ Reiner Herrmann ]
* fix FTBFS with GCC 10
Closes: #966191
.
[ Andreas Tille ]
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Use secure URI in Homepage field.
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Remove obsolete field Name from debian/upstream/metadata (already present
in
machine-readable debian/copyright).
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