Your message dated Sun, 20 Sep 2020 21:50:20 +0000
with message-id <[email protected]>
and subject line Bug#966214: fixed in vienna-rna 2.4.14+dfsg-2
has caused the Debian Bug report #966214,
regarding vienna-rna: FTBFS with GCC 10: multiple definition of ... due to
-fno-common
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
966214: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966214
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: vienna-rna
Version: 2.4.14+dfsg-1
Severity: serious
Tags: ftbfs
Justification: fails to build from source
User: [email protected]
Usertags: ftbfs-gcc-10
Hi,
vienna-rna started to FTBFS when GCC 10 was made the default compiler:
gcc -I./../../src/ViennaRNA -I./../../src -I/usr/include/json-c/
-I/usr/include/libsvm/ -Wl,-z,relro -o Kinfold baum.o cache.o globals.o main.o
nachbar.o cmdline.o -fno-strict-aliasing -flto -L./../../src/ViennaRNA -lRNA
-fopenmp -lgsl -lgslcblas -lmpfr -lgmp -lm
/usr/bin/ld: globals.o:(.bss+0x0): multiple definition of `GSV';
baum.o:(.bss+0x0): first defined here
/usr/bin/ld: globals.o:(.bss+0x60): multiple definition of `GAV';
baum.o:(.bss+0x60): first defined here
/usr/bin/ld: globals.o:(.bss+0x8c0): multiple definition of `GTV';
baum.o:(.bss+0x8c0): first defined here
/usr/bin/ld: main.o:(.bss+0x0): multiple definition of `GSV';
baum.o:(.bss+0x0): first defined here
/usr/bin/ld: main.o:(.bss+0x60): multiple definition of `GAV';
baum.o:(.bss+0x60): first defined here
/usr/bin/ld: main.o:(.bss+0x8c0): multiple definition of `GTV';
baum.o:(.bss+0x8c0): first defined here
/usr/bin/ld: nachbar.o:(.bss+0x0): multiple definition of `GSV';
baum.o:(.bss+0x0): first defined here
/usr/bin/ld: nachbar.o:(.bss+0x60): multiple definition of `GAV';
baum.o:(.bss+0x60): first defined here
/usr/bin/ld: nachbar.o:(.bss+0x8c0): multiple definition of `GTV';
baum.o:(.bss+0x8c0): first defined here
collect2: error: ld returned 1 exit status
make[6]: *** [Makefile:485: Kinfold] Error 1
More information about the corresponding GCC change can be found here:
https://gcc.gnu.org/gcc-10/porting_to.html
"Default to -fno-common"
Andreas
--- End Message ---
--- Begin Message ---
Source: vienna-rna
Source-Version: 2.4.14+dfsg-2
Done: Shayan Doust <[email protected]>
We believe that the bug you reported is fixed in the latest version of
vienna-rna, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Shayan Doust <[email protected]> (supplier of updated vienna-rna package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 20 Sep 2020 20:50:20 +0100
Source: vienna-rna
Architecture: source
Version: 2.4.14+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Shayan Doust <[email protected]>
Closes: 966214
Changes:
vienna-rna (2.4.14+dfsg-2) unstable; urgency=medium
.
[ Andreas Tille ]
* Team upload.
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/control (routine-update)
* Remove trailing whitespace in debian/rules (routine-update)
* Add salsa-ci file (routine-update)
* Trim trailing whitespace.
* debian/copyright: use spaces rather than tabs to start continuation lines.
* Update renamed lintian tag names in lintian overrides.
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Remove obsolete field Name from debian/upstream/metadata (already present
in
machine-readable debian/copyright).
.
[ Shayan Doust ]
* Patch to fix gcc-10 FTBFS (Closes: #966214)
* override_dh_missing for now due to mass files not installed
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