Your message dated Fri, 23 Oct 2020 18:48:33 +0000
with message-id <[email protected]>
and subject line Bug#972548: fixed in python-skbio 0.5.6-3.1
has caused the Debian Bug report #972548,
regarding python-skbio: FTBFS with Python 3.9 as supported
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
972548: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=972548
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-skbio
Version: 0.5.6-3
Tags: ftbfs sid bullseye
User: [email protected]
Usertags: python3.9
Hi Maintainer
Python-skbio FTBFS with Python 3.9 as a supported Python version.
I've copied what I hope is the relevant part of the log below.
Regards
Graham
[1] https://buildd.debian.org/status/package.php?p=python-skbio
=================================== FAILURES ===================================
_
TestTabularMSAPositionalMetadata.test_positional_metadata_getter_set_column_array
_
ValueError: Length of values (7) does not match length of index (8)
During handling of the above exception, another exception occurred:
self = <skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata
testMethod=test_positional_metadata_getter_set_column_array>
def test_positional_metadata_getter_set_column_array(self):
length = 8
obj = self._positional_metadata_constructor_(
length, positional_metadata={'foo': range(length)})
# array-like objects will fail if wrong size.
for array_like in (np.array(range(length-1)), range(length-1),
np.array(range(length+1)), range(length+1)):
with self.assertRaisesRegex(ValueError,
"Length of values does not match "
"length of index"):
> obj.positional_metadata['bar'] = array_like
E AssertionError: "Length of values does not match
length of index" does not match "Length of values (7) does not match
length of index (8)"
skbio/metadata/_testing.py:721: AssertionError
_ TestPositionalMetadataMixin.test_positional_metadata_getter_set_column_array _
ValueError: Length of values (7) does not match length of index (8)
During handling of the above exception, another exception occurred:
self = <skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin
testMethod=test_positional_metadata_getter_set_column_array>
def test_positional_metadata_getter_set_column_array(self):
length = 8
obj = self._positional_metadata_constructor_(
length, positional_metadata={'foo': range(length)})
# array-like objects will fail if wrong size.
for array_like in (np.array(range(length-1)), range(length-1),
np.array(range(length+1)), range(length+1)):
with self.assertRaisesRegex(ValueError,
"Length of values does not match "
"length of index"):
> obj.positional_metadata['bar'] = array_like
E AssertionError: "Length of values does not match
length of index" does not match "Length of values (7) does not match
length of index (8)"
skbio/metadata/_testing.py:721: AssertionError
_
TestSequencePositionalMetadata.test_positional_metadata_getter_set_column_array
_
ValueError: Length of values (7) does not match length of index (8)
During handling of the above exception, another exception occurred:
self = <skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata
testMethod=test_positional_metadata_getter_set_column_array>
def test_positional_metadata_getter_set_column_array(self):
length = 8
obj = self._positional_metadata_constructor_(
length, positional_metadata={'foo': range(length)})
# array-like objects will fail if wrong size.
for array_like in (np.array(range(length-1)), range(length-1),
np.array(range(length+1)), range(length+1)):
with self.assertRaisesRegex(ValueError,
"Length of values does not match "
"length of index"):
> obj.positional_metadata['bar'] = array_like
E AssertionError: "Length of values does not match
length of index" does not match "Length of values (7) does not match
length of index (8)"
skbio/metadata/_testing.py:721: AssertionError
--- End Message ---
--- Begin Message ---
Source: python-skbio
Source-Version: 0.5.6-3.1
Done: Stefano Rivera <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-skbio, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Stefano Rivera <[email protected]> (supplier of updated python-skbio package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 20 Oct 2020 11:00:59 -0700
Source: python-skbio
Architecture: source
Version: 0.5.6-3.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Stefano Rivera <[email protected]>
Closes: 972548
Changes:
python-skbio (0.5.6-3.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Patches: Support Pandas 1.1. (Closes: #972548)
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