Your message dated Mon, 23 Nov 2020 08:44:25 +0000
with message-id <[email protected]>
and subject line Bug#975511: fixed in clustalo 1.2.4-7
has caused the Debian Bug report #975511,
regarding segfaults on s390x
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
975511: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=975511
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: clustalo
Version: 1.2.4-6
Hi,
as initially found and discussed on Launchpad/Ubuntu [1] there is a
segfault of clustalo on s390x.
So far it didn't hit you on your s390x builds [2] but it seems pretty
reliable for us already and on a rebuild in Debian unstable I've hit
it as well. It is triggered by the new self-test after build in
1.2.4-6.
The underlying root cause was identified in [3] which I also reported
to upstream and the Debian Med Team as mail. We now have three
options:
- wait for upstreams stance on the suggested change
- switch optimization to -O0 on s390x which avoids the issue for now
- apply the suggested patch without upstream commenting on it
This is up to you to decide what you prefer and I last week already
opened an MR for it [4].
[1]: https://bugs.launchpad.net/ubuntu/+source/clustalo/+bug/1903817
[2]: https://buildd.debian.org/status/architecture.php?a=s390x&suite=sid
[3]: https://bugs.launchpad.net/ubuntu/+source/clustalo/+bug/1903817/comments/15
[4]: https://salsa.debian.org/med-team/clustalo/-/merge_requests/1
--
Christian Ehrhardt
Staff Engineer, Ubuntu Server
Canonical Ltd
--- End Message ---
--- Begin Message ---
Source: clustalo
Source-Version: 1.2.4-7
Done: [email protected] (Michael R. Crusoe)
We believe that the bug you reported is fixed in the latest version of
clustalo, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated clustalo package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 23 Nov 2020 09:14:51 +0100
Source: clustalo
Architecture: source
Version: 1.2.4-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Closes: 975511
Changes:
clustalo (1.2.4-7) unstable; urgency=medium
.
* Team upload.
* debian/rules: fix segfaults on s390x by compiling with -O0, courtesy
Christian Ehrhardt <[email protected]>. Closes: #975511
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* debian/control: mark libclustalo-doc as Multi-Arch: foreign, thanks to the
Multiarch hinter
* debian/docs: use installed path for README to appease dh-missing
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