Your message dated Tue, 1 Dec 2020 07:05:14 +0100
with message-id <[email protected]>
and subject line Bug was closed with new upstream version
has caused the Debian Bug report #952003,
regarding relion: FTBFS: src/mpi.cpp:56:23: error: call to ‘MPI_Errhandler_set’
declared with attribute error: MPI_Errhandler_set was removed in MPI-3.0. Use
MPI_Comm_set_errhandler instead.
to be marked as done.
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952003: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=952003
Debian Bug Tracking System
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--- Begin Message ---
Source: relion
Version: 1.4+dfsg-4
Severity: serious
Justification: FTBFS on amd64
Tags: buster sid
Usertags: ftbfs-20200222 ftbfs-buster
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi
> -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2
> -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
> -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp
> libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time
> -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -c
> src/autopicker_mpi.cpp -fPIC -DPIC -o src/.libs/autopicker_mpi.o
> src/mpi.cpp: In constructor ‘MpiNode::MpiNode(int&, char**)’:
> src/mpi.cpp:56:23: error: call to ‘MPI_Errhandler_set’ declared with
> attribute error: MPI_Errhandler_set was removed in MPI-3.0. Use
> MPI_Comm_set_errhandler instead.
> 56 | MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN);
> | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> make[3]: *** [Makefile:1305: src/mpi.lo] Error 1
The full build log is available from:
http://qa-logs.debian.net/2020/02/22/relion_1.4+dfsg-4_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
This bug should have been closed with relion 3.x
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http://fam-tille.de
--- End Message ---
