Your message dated Wed, 02 Dec 2020 00:48:55 +0000
with message-id <[email protected]>
and subject line Bug#954272: fixed in slurm-wlm 20.02.6-2
has caused the Debian Bug report #954272,
regarding slurmd: SLURM not working with OpenMPI
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
954272: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=954272
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: slurmd
Version: 19.05.3.2-2+b1
Severity: important
Dear Maintainer,
I am trying to get SLURM working on a single node. I have installed and
configured slurmd and slurmctld.
A simple test like `srun hostname` works, even on multiple cores. However, when
trying to use MPI, it crashes with the following error message:
*** An error occurred in MPI_Init
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
*** and potentially your MPI job)
This happens even in the most simple "Hello World" case, as long as the program
is MPI-enabled.
I am trying to use OpenMPI (4.0.2) from the Debian repositories. `srun --mpi
list` returns:
srun: MPI types are...
srun: openmpi
srun: pmi2
srun: none
I have tried all options, but the result is the same in all cases.
Maybe this is user error, as this is my first time setting up SLURM, but I have
not been able to find any possible causes/solutions and I am kind of stuck at
this point.
Regards,
Lars
-- System Information:
Debian Release: bullseye/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 5.4.0-3-amd64 (SMP w/64 CPU cores)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8),
LANGUAGE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages slurmd depends on:
ii libc6 2.30-2
ii libhwloc15 2.1.0+dfsg-4
ii liblz4-1 1.9.2-2
ii libnuma1 2.0.12-1+b1
ii libpam0g 1.3.1-5
ii lsb-base 11.1.0
ii munge 0.5.13-2+b1
ii openssl 1.1.1d-2
ii slurm-wlm-basic-plugins 19.05.3.2-2+b1
ii ucf 3.0038+nmu1
ii zlib1g 1:1.2.11.dfsg-2
slurmd recommends no packages.
slurmd suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: slurm-wlm
Source-Version: 20.02.6-2
Done: Gennaro Oliva <[email protected]>
We believe that the bug you reported is fixed in the latest version of
slurm-wlm, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gennaro Oliva <[email protected]> (supplier of updated slurm-wlm package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 02 Dec 2020 01:13:08 +0100
Source: slurm-wlm
Architecture: source
Version: 20.02.6-2
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team <[email protected]>
Changed-By: Gennaro Oliva <[email protected]>
Closes: 954272
Changes:
slurm-wlm (20.02.6-2) unstable; urgency=medium
.
* Fix pmix support (Closes: #954272)
* Fix srun autopkgtest
* Tweak slurm.conf for autopkgtest
* Add mpi autopkgtest
* Bump standard version to 4.5.1 (no changes)
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