Your message dated Wed, 17 Feb 2021 14:49:01 +0000
with message-id <[email protected]>
and subject line Bug#982930: fixed in wham-align 0.1.5-7
has caused the Debian Bug report #982930,
regarding wham-align: FTCBFS: multiple reasons
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
982930: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=982930
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: wham-align
Version: 0.1.5-6 <https://packages.debian.org/source/unstable/wham-align>
Tags: patch
User: [email protected] <mailto:[email protected]>
Usertags: ftcbfs
X-Debbugs-Cc: [email protected]
<mailto:[email protected]>
Hi,
wham-align fails to cross build due to two reasons:
* It uses ${CC} for g++ and uses CFLAGS for corresponding g++ flags.
Using proper variables, i.e. replacing CXX and CXXFLAGS fixes this part. Patch
for it is attached.
* It uses help2man for manpage, best way forward here would be to use
maintainer manual page with the createmangapges script that several debian-med
packages use and not use help2man during build time.
[1]:
https://salsa.debian.org/med-team/community/helper-scripts/-/blob/master/createmanpages
Nilesh
<mailto:[email protected]>
--- a/makefile
+++ b/makefile
@@ -1,5 +1,5 @@
-CC=g++
-CFLAGS += -O3 -Wno-write-strings
+CXX=g++
+CXXFLAGS += -O3 -Wno-write-strings
#CFLAGS= -g -Wno-write-strings
LDLIBS += -lpthread
@@ -16,64 +16,64 @@
all: wham wham-build
wham: makefile hash.o embedhash.o main.o sequence.o aligner.o interval.o edit_distance.o error.o short.o hitset.o perfcounters.o model.o writer.o
- $(CC) -o wham sequence.o hash.o embedhash.o main.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o perfcounters.o writer.o $(LDLIBS)
+ $(CXX) -o wham sequence.o hash.o embedhash.o main.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o perfcounters.o writer.o $(LDLIBS)
wham-build: makefile hash.o embedhash.o builder.o sequence.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o writer.o
- $(CC) -o wham-build sequence.o hash.o embedhash.o builder.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o perfcounters.o writer.o $(LDLIBS)
+ $(CXX) -o wham-build sequence.o hash.o embedhash.o builder.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o perfcounters.o writer.o $(LDLIBS)
wham-test: makefile unittest.o hash.o embedhash.o sequence.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o
- $(CC) -o wham-test unittest.o sequence.o hash.o embedhash.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o perfcounters.o $(LDLIBS)
+ $(CXX) -o wham-test unittest.o sequence.o hash.o embedhash.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o perfcounters.o $(LDLIBS)
unittest.o: makefile unittest.cpp bitread.h
- $(CC) -c $(CFLAGS) unittest.cpp
+ $(CXX) -c $(CXXFLAGS) unittest.cpp
interval.o: makefile interval.cpp interval.h lib.h error.h
- $(CC) -c $(CFLAGS) interval.cpp
+ $(CXX) -c $(CXXFLAGS) interval.cpp
edit_distance.o: makefile edit_distance.cpp edit_distance.h error.h
- $(CC) -c $(CFLAGS) edit_distance.cpp
+ $(CXX) -c $(CXXFLAGS) edit_distance.cpp
embedhash.o: makefile embedhash.cpp embedhash.h hash.h edit_distance.h sequence.h lib.h error.h hitset.h pair.h
- $(CC) -c $(CFLAGS) embedhash.cpp
+ $(CXX) -c $(CXXFLAGS) embedhash.cpp
hash.o: makefile hash.cpp hash.h edit_distance.h sequence.h lib.h error.h hitset.h pair.h
- $(CC) -c $(CFLAGS) hash.cpp
+ $(CXX) -c $(CXXFLAGS) hash.cpp
aligner.o: makefile aligner.cpp aligner.h hash.h sequence.h lib.h error.h short.h hitset.h
- $(CC) -c $(CFLAGS) aligner.cpp
+ $(CXX) -c $(CXXFLAGS) aligner.cpp
main.o: makefile main.cpp hash.h aligner.h sequence.h lib.h error.h perfcounters.h rdtsc.h pair.h
- $(CC) -c $(CFLAGS) main.cpp
+ $(CXX) -c $(CXXFLAGS) main.cpp
sequence.o: makefile sequence.cpp sequence.h lib.h error.h
- $(CC) -c $(CFLAGS) sequence.cpp
+ $(CXX) -c $(CXXFLAGS) sequence.cpp
error.o: makefile error.h
- $(CC) -c $(CFLAGS) error.cpp
+ $(CXX) -c $(CXXFLAGS) error.cpp
short.o: makefile short.cpp short.h sequence.h lib.h error.h
- $(CC) -c $(CFLAGS) short.cpp
+ $(CXX) -c $(CXXFLAGS) short.cpp
hitset.o: makefile hitset.cpp hitset.h lib.h short.h
- $(CC) -c $(CFLAGS) hitset.cpp
+ $(CXX) -c $(CXXFLAGS) hitset.cpp
model.o: makefile model.cpp model.h
- $(CC) -c $(CFLAGS) model.cpp
+ $(CXX) -c $(CXXFLAGS) model.cpp
writer.o: makefile writer.cpp writer.h sequence.h short.h
- $(CC) -c $(CFLAGS) writer.cpp
+ $(CXX) -c $(CXXFLAGS) writer.cpp
builder.o: makefile builder.cpp hash.h aligner.h sequence.h lib.h error.h short.h
- $(CC) -c $(CFLAGS) builder.cpp
+ $(CXX) -c $(CXXFLAGS) builder.cpp
filter.o: makefile filter.cpp hash.h aligner.h sequence.h lib.h error.h short.h
- $(CC) -c $(CFLAGS) filter.cpp
+ $(CXX) -c $(CXXFLAGS) filter.cpp
sorter.o: makefile sorter.cpp aligner.h
- $(CC) -c $(CFLAGS) sorter.cpp
+ $(CXX) -c $(CXXFLAGS) sorter.cpp
perfcounters.o: makefile perfcounters.cpp perfcounters.h
- $(CC) -c $(CFLAGS) perfcounters.cpp
+ $(CXX) -c $(CXXFLAGS) perfcounters.cpp
clean:
rm -f wham wham-build *.o
--- End Message ---
--- Begin Message ---
Source: wham-align
Source-Version: 0.1.5-7
Done: Nilesh Patra <[email protected]>
We believe that the bug you reported is fixed in the latest version of
wham-align, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <[email protected]> (supplier of updated wham-align package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 17 Feb 2021 14:25:08 +0000
Source: wham-align
Architecture: source
Version: 0.1.5-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Nilesh Patra <[email protected]>
Closes: 982930
Changes:
wham-align (0.1.5-7) unstable; urgency=medium
.
* Team Upload.
* Use CXX for g++ and CXXFLAGS for corresponding flags
* Use createmanpages to maintain manpages and do not create
manpages during build time to fix non cross-buildability
Closes: #982930
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