Your message dated Mon, 12 Apr 2021 18:19:20 +0000
with message-id <[email protected]>
and subject line Bug#986768: fixed in snakemake 5.24.1-2
has caused the Debian Bug report #986768,
regarding snakemake: autopkgtest regression: Missing input files for rule
remote_ancient
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
986768: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=986768
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: snakemake
Version: 5.24.1-1
User: [email protected]
Usertags: regression
X-Debbugs-CC: [email protected]
Dear maintainer,
Your package has an autopkgtest, great! However, the last couple of days
it started to fail [1]. Looking at the error, it seems a remote file has
disappeared. Can you investigate and fix the situation? Additionally, if
your test needs internet, it must set the needs-internet restriction.
Paul
[1] https://ci.debian.net/packages/s/snakemake/
https://ci.debian.net/data/autopkgtest/testing/amd64/s/snakemake/11609476/log.gz
----------------------------- Captured stderr call
-----------------------------
Building DAG of jobs...
Full Traceback (most recent call last):
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/__init__.py",
line 643, in snakemake
success = workflow.execute(
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/workflow.py",
line 672, in execute
dag.init()
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/dag.py",
line 177, in init
job = self.update(self.file2jobs(file), file=file, progress=progress)
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/dag.py",
line 753, in update
raise exceptions[0]
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/dag.py",
line 711, in update
self.update_(
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/dag.py",
line 848, in update_
raise MissingInputException(job.rule, missing_input)
snakemake.exceptions.MissingInputException: Missing input files for rule
remote_ancient:
github.com/snakemake/snakemake/raw/master/tests/test_remote_http/expected-results/landsat-data.txt
MissingInputException in line 38 of /tmp/snakemake-s4m7gneh/Snakefile:
Missing input files for rule remote_ancient:
github.com/snakemake/snakemake/raw/master/tests/test_remote_http/expected-results/landsat-data.txt
unlocking
removed all locks
------------------------------ Captured log call
-------------------------------
WARNING snakemake.logging:logging.py:373 Building DAG of jobs...
DEBUG snakemake.logging:logging.py:379 Full Traceback (most recent
call last):
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/__init__.py",
line 643, in snakemake
success = workflow.execute(
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/workflow.py",
line 672, in execute
dag.init()
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/dag.py",
line 177, in init
job = self.update(self.file2jobs(file), file=file, progress=progress)
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/dag.py",
line 753, in update
raise exceptions[0]
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/dag.py",
line 711, in update
self.update_(
File
"/tmp/autopkgtest-lxc.q0choluk/downtmp/build.FZs/src/snakemake/dag.py",
line 848, in update_
raise MissingInputException(job.rule, missing_input)
snakemake.exceptions.MissingInputException: Missing input files for rule
remote_ancient:
github.com/snakemake/snakemake/raw/master/tests/test_remote_http/expected-results/landsat-data.txt
ERROR snakemake.logging:logging.py:377 MissingInputException in line
38 of /tmp/snakemake-s4m7gneh/Snakefile:
Missing input files for rule remote_ancient:
github.com/snakemake/snakemake/raw/master/tests/test_remote_http/expected-results/landsat-data.txt
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: snakemake
Source-Version: 5.24.1-2
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
snakemake, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated snakemake package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 12 Apr 2021 17:17:32 +0200
Source: snakemake
Architecture: source
Version: 5.24.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 986768
Changes:
snakemake (5.24.1-2) unstable; urgency=medium
.
* Team upload.
* Skip tests accessing remote locations
Closes: #986768
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--- End Message ---
