Your message dated Mon, 30 Aug 2021 15:03:53 +0000
with message-id <[email protected]>
and subject line Bug#993304: fixed in samtools 1.13-2
has caused the Debian Bug report #993304,
regarding samtools: please make the build reproducible
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
993304: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=993304
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: samtools
Version: 1.13-1
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: buildpath
X-Debbugs-Cc: [email protected]
Hi,
Whilst working on the Reproducible Builds effort [0] we noticed that
samtools could not be built reproducibly.
This is because it includes the build flags in the binary to include
in --version output, but this will encode the buildpath due to
dpkg-buildflags(1) embedding (for example) -ffile-prefix-map.
Patch attached that normalises these paths to a placeholder entry
using sed(1).
[0] https://reproducible-builds.org/
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
--- a/Makefile 2021-08-30 13:55:03.961164646 +0100
--- b/Makefile 2021-08-30 14:49:18.163317766 +0100
@@ -130,6 +130,7 @@
echo '#define SAMTOOLS_HTSDIR "$(HTSDIR)"' >> $@
echo '#define SAMTOOLS_LIBS "$(LIBS)"' >> $@
echo '#define SAMTOOLS_CURSES_LIB "$(CURSES_LIB)"' >> $@
+ sed -i -e 's@$(CURDIR)@«BUILDPATH»@g' $@
print-version:
@echo $(PACKAGE_VERSION)
--- End Message ---
--- Begin Message ---
Source: samtools
Source-Version: 1.13-2
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
samtools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated samtools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 30 Aug 2021 16:32:37 +0200
Source: samtools
Architecture: source
Version: 1.13-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 993304
Changes:
samtools (1.13-2) unstable; urgency=medium
.
[ Étienne Mollier ]
* d/control: bump B-D libhts-dev (>= 1.13~); builds otherwise break against
older htslib versions.
.
[ Andreas Tille ]
* make the build reproducible (Thanks for the patch to Chris Lamb)
Closes: #993304
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