Your message dated Thu, 30 Sep 2021 21:44:00 +0200
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<calf6qjm_bkn45befprf+9czk4n_2lqps-p3dy2gear1kuhg...@mail.gmail.com>
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has caused the Debian Bug report #839387,
regarding libopenmpi2: Programs crash if run under fakeroot
to be marked as done.
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839387: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=839387
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: libopenmpi2
Severity: important
Version: 2.0.1-5
Hi,
if I run a program linked to OpenMPI's libmpi under fakeroot, it
crashes:
|(unstable-amd64-sbuild)mba@hartree:/$ OMPI_MCA_orte_rsh_agent=/bin/false
|pw.x
|
| Program PWSCF v.5.4.0 starts on 1Oct2016 at 10:29:47
|
| This program is part of the open-source Quantum ESPRESSO suite
| for quantum simulation of materials; please cite
| "P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502
|(2009);
| URL http://www.quantum-espresso.org";,
| in publications or presentations arising from this work. More
|details at
| http://www.quantum-espresso.org/quote
|
| Parallel version (MPI), running on 1 processors
|Open_input_file: error opening input_tmp.in
|
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
| Error in routine read_input (2):
| opening input file
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
| stopping ...
|At line 97 of file error_handler.f90 (unit = 99)
|Fortran runtime error: Cannot open file 'CRASH': Permission denied
|
|Error termination. Backtrace:
|#0 0x7f4082814d4a
|#1 0x7f4082815825
|#2 0x7f4082815f79
|#3 0x7f40828d5e4a
|#4 0x7f40828d608d
|#5 0x657c0a
|#6 0x6adf9a
|#7 0x407cfd
|#8 0x7f4081b042b0
|#9 0x407d59
|#10 0xffffffffffffffff
|(unstable-amd64-sbuild)mba@hartree:/$ OMPI_MCA_orte_rsh_agent=/bin/false
|fakeroot pw.x
|[hartree:10002] PMIX ERROR: INVALID-CREDENTIAL in file
|src/server/pmix_server_listener.c at line 540
|[hartree:10001] PMIX ERROR: UNREACHABLE in file src/client/pmix_client.c
|at line 983
|[hartree:10001] PMIX ERROR: UNREACHABLE in file src/client/pmix_client.c
|at line 199
|--------------------------------------------------------------------------
|It looks like orte_init failed for some reason; your parallel process is
|likely to abort. There are many reasons that a parallel process can
|fail during orte_init; some of which are due to configuration or
|environment problems. This failure appears to be an internal failure;
|here's some additional information (which may only be relevant to an
|Open MPI developer):
|
| init pmix failed
| --> Returned value Unreachable (-12) instead of ORTE_SUCCESS
|--------------------------------------------------------------------------
|--------------------------------------------------------------------------
|It looks like orte_init failed for some reason; your parallel process is
|likely to abort. There are many reasons that a parallel process can
|fail during orte_init; some of which are due to configuration or
|environment problems. This failure appears to be an internal failure;
|here's some additional information (which may only be relevant to an
|Open MPI developer):
|
| orte_ess_init failed
| --> Returned value Unreachable (-12) instead of ORTE_SUCCESS
|--------------------------------------------------------------------------
|--------------------------------------------------------------------------
|It looks like MPI_INIT failed for some reason; your parallel process is
|likely to abort. There are many reasons that a parallel process can
|fail during MPI_INIT; some of which are due to configuration or
|environment
|problems. This failure appears to be an internal failure; here's some
|additional information (which may only be relevant to an Open MPI
|developer):
|
| ompi_mpi_init: ompi_rte_init failed
| --> Returned "Unreachable" (-12) instead of "Success" (0)
|--------------------------------------------------------------------------
|*** An error occurred in MPI_Init
|*** on a NULL communicator
|*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
|*** and potentially your MPI job)
|[hartree:10001] Local abort before MPI_INIT completed completed
|successfully, but am not able to aggregate error messages, and not able
|to guarantee that all other processes were killed!
|(unstable-amd64-sbuild)mba@hartree:/$ libfakeroot, when sending message:
|Invalid argument
|libfakeroot, when sending message: Invalid argument
|libfakeroot, when sending message: Invalid argument
|semop(1): encountered an error: Invalid argument
pw.x (from quantum-espresso) is linked to the fortran MPI library as
well, not sure if that matters:
|(unstable-amd64-sbuild)mba@hartree:/$ ldd /usr/bin/pw.x | grep mpi
| libscalapack-openmpi.so.1 => /usr//lib/libscalapack-openmpi.so.1
(0x00007fded925f000)
| libblacs-openmpi.so.1 => /usr//lib/libblacs-openmpi.so.1
(0x00007fded902a000)
| libblacsF77init-openmpi.so.1 => /usr//lib/libblacsF77init-openmpi.so.1
(0x00007fded8e28000)
| libmpi_usempif08.so.20 => /usr//lib/libmpi_usempif08.so.20
(0x00007fded7d85000)
| libmpi_usempi_ignore_tkr.so.20 =>
/usr//lib/libmpi_usempi_ignore_tkr.so.20 (0x00007fded7b7f000)
| libmpi_mpifh.so.20 => /usr//lib/libmpi_mpifh.so.20 (0x00007fded7928000)
| libmpi.so.20 => /usr//lib/libmpi.so.20 (0x00007fded7636000)
| libblacsCinit-openmpi.so.1 => /usr//lib/libblacsCinit-openmpi.so.1
(0x00007fded6073000)
Michael
--- End Message ---
--- Begin Message ---
Anton
--- End Message ---
