Your message dated Thu, 09 Dec 2021 07:49:31 +0000 with message-id <[email protected]> and subject line Bug#979625: fixed in python-cooler 0.8.11-1 has caused the Debian Bug report #979625, regarding autopkgtest: ModuleNotFoundError (ipytree) and AssertionError to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 979625: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=979625 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:python-cooler Version: 0.8.8-1 Severity: serious Dear Maintainer, debci reports errors for this package's tests. There is a ModuleNotFoundError and one error with the result of `runner.invoke(show, [f_in, 'chr1', '-o', 'bla'])`. =================================== FAILURES =================================== __________________________________ test_show ___________________________________ def test_show(): runner = CliRunner() with runner.isolated_filesystem(): f_in = op.join(datadir, "toy.symm.upper.2.cool") result = runner.invoke(show, [f_in, 'chr1', '-o', 'bla']) > assert result.exit_code == 0 E assert 1 == 0 E + where 1 = <Result SystemExit(1)>.exit_code tests/test_cli_export.py:116: AssertionError _______________________________ test_print_trees _______________________________ group = <Closed HDF5 file>, expand = False, level = None def tree_widget(group, expand, level): try: > import ipytree E ModuleNotFoundError: No module named 'ipytree' /usr/lib/python3/dist-packages/cooler/fileops.py:299: ModuleNotFoundError During handling of the above exception, another exception occurred: def test_print_trees(): src_file = op.join(testdir, "data", "toy.symm.upper.2.mcool") fileops.pprint_attr_tree(src_file, level=3) fileops.pprint_data_tree(src_file, level=3) with h5py.File(src_file) as f: t = fileops.TreeViewer(f) > t._ipython_display_() tests/test_fileops.py:152: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/cooler/fileops.py:391: in _ipython_display_ tree = tree_widget(self.group, expand=self.expand, level=self.level) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ group = <Closed HDF5 file>, expand = False, level = None def tree_widget(group, expand, level): try: import ipytree except ImportError as error: > raise ImportError( "{}: Run `pip install ipytree` or `conda install ipytree`" "to get the required ipytree dependency for displaying the tree " "widget. If using jupyterlab, you also need to run " "`jupyter labextension install ipytree`".format(error) ) E ImportError: No module named 'ipytree': Run `pip install ipytree` or `conda install ipytree`to get the required ipytree dependency for displaying the tree widget. If using jupyterlab, you also need to run `jupyter labextension install ipytree` /usr/lib/python3/dist-packages/cooler/fileops.py:301: ImportError
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--- Begin Message ---Source: python-cooler Source-Version: 0.8.11-1 Done: Andreas Tille <[email protected]> We believe that the bug you reported is fixed in the latest version of python-cooler, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated python-cooler package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 09 Dec 2021 08:27:41 +0100 Source: python-cooler Architecture: source Version: 0.8.11-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Closes: 965361 979625 1000814 Changes: python-cooler (0.8.11-1) unstable; urgency=medium . [ Andreas Tille ] * New upstream version Closes: #1000814 * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) * Upstream is testing the extra requirement if ipytree (see ITP #985001). These tests are excluded for the moment. Closes: #979625 . [ Nilesh Patra ] * Make Build Reproducible (Closes: #965361) Checksums-Sha1: 88ab63161c531b7c4968e41fe269ebfc798faf2f 2464 python-cooler_0.8.11-1.dsc b34c1db04b32c02532a08e05a2fc97df81a8b0ae 11354378 python-cooler_0.8.11.orig.tar.gz eab8d1ce4015dac64c84a8228d41b9dc536c99d8 5772 python-cooler_0.8.11-1.debian.tar.xz 5d35cc5c0c8393eaa0eadeed3759b895e5763490 8152 python-cooler_0.8.11-1_amd64.buildinfo Checksums-Sha256: db56c02bc3db5a7534b5910dc2edbc90fe63bfd82d6c20865414aab9075f1b4a 2464 python-cooler_0.8.11-1.dsc ad7a888721254e3cce73f78c4b5b12ddf5ebee2e878a4f027e3a15c4cd9dbf7d 11354378 python-cooler_0.8.11.orig.tar.gz 0e1b3687b61de8ec3b0bc496f6749afee6f3cd8981aea22cc9418338c6901a97 5772 python-cooler_0.8.11-1.debian.tar.xz b4ff86f973bd8b49193848cd7537c120f515a309a89704c736b1a0550884aac0 8152 python-cooler_0.8.11-1_amd64.buildinfo Files: 0e47531cb2e3370d05cafe9ab18fc3aa 2464 science optional python-cooler_0.8.11-1.dsc 0abd28ec467636ec3204f52e0d205b5b 11354378 science optional python-cooler_0.8.11.orig.tar.gz 63ff847727242551673af2d21975c72b 5772 science optional python-cooler_0.8.11-1.debian.tar.xz 889ed0028a22ea110fab38efb037acda 8152 science optional python-cooler_0.8.11-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmGxsMQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF2xQ//S7NfdHPyXEk97f16i8olVz+d5PtDNh2x DYXGgd9y/j6Hm8qHuN2rgUxkUmGqEdu0UNjKxZoJByKw57WgXn1erF+deXPnVSHR p+sK0A2mkKt1GB4fNETQPQoxhRGlUucj9lP+xmVYeoiuMPU+6A/TIiPIzFUr8FjZ pJaQG1BWb0wJxbYhe4WgQJke5hl93kLlZpcnmQABOoL4nxHLOfIFPc2Yd7fP71By rioyLf1otwka+JxPA7GE3zblZ6ggmKvuXRjUnCFF099ctiE3jUEAzTWcJGEZoXhh hJKZkKrxyTxutGLb2Ug7afwr0wTblWIXxPCmARc6S/Eo0OPXv1KhaU5eCLcIXYFn +W/6y3lH5pz4MKfVZzio80eX6pm2mA3PmHna37Z38pGF1XVIZt43czh5xOkCsdsf UicS4iN1u+6rWihb803kcSGGTSUiTpu1l/19CcHrgC/J/K7xOwsqo20A72eynd7A U2LFWke1Qwb7QjDHlqViyNJ5CbeS5IhIojCPmSTUitkemyO4i/bE4mS3JzXnbFkk SLlzCCzr4tFCrDXt3B3+Zjcf3P5Ix6Afy38fUbkyYiUoniXQC5PKjb0zn0nNXgCw ACDgbjZs7t7lMnrQe0e+bK9vdGY/DJMhvpFq1BQvQS53yhHxv2dYkidUH8c1k+Lw HHBJiPukP6Q= =AL0C -----END PGP SIGNATURE-----
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