Your message dated Mon, 13 Dec 2021 18:50:06 +0000
with message-id <[email protected]>
and subject line Bug#985071: fixed in smalt 0.7.6-10
has caused the Debian Bug report #985071,
regarding smalt: native FTBFS with DEB_BUILD_OPTIONS=nocheck
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
985071: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=985071
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: smalt
Version: 0.7.6-9
Severity: important
X-Debbugs-Cc: [email protected]
Dear Maintainer,
On running with NOCHECK build opts and profile nocheck enabled, smalt
Fails to build from source with:
dh binary
dh_testroot
dh_prep
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# upstream install does install more files than needed
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install-indep
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
# fix path to smalt executable in examples
for py in `ls test/*.py` ; do \
sed 's#PROGNAM = "../src/smalt"#PROGNAM = "/usr/bin/smalt"#' ${py} >
debian/smalt-examples/usr/share/doc/smalt/${py} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -Nsmalt-examples
dh_install: warning: Cannot find (any matches for)
"test/sequenceReverseComplement_test" (tried in ., debian/tmp)
dh_install: warning: smalt missing files: test/sequenceReverseComplement_test
dh_install: error: missing files, aborting
make: *** [debian/rules:8: binary] Error 25
dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit
status 2
--------------------------------------------------------------------------------
This is because smalt tried to install test/sequenceReverseComplement_test
which will only be generated when
tests are run -- making this fragile when they are not.
Please consider adding a check for nocheck profile, and install this
file *only* when there is no nocheck.
Cheers,
Nilesh
-- System Information:
Debian Release: bullseye/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 5.7.0-2-amd64 (SMP w/8 CPU threads)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: unable to detect
Versions of packages smalt depends on:
ii libbambamc0 0.0.50-3
ii libc6 2.31-3
ii zlib1g 1:1.2.11.dfsg-2
smalt recommends no packages.
smalt suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: smalt
Source-Version: 0.7.6-10
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
smalt, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated smalt package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 13 Dec 2021 19:29:12 +0100
Source: smalt
Architecture: source
Version: 0.7.6-10
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 985071
Changes:
smalt (0.7.6-10) unstable; urgency=medium
.
[ Debian Janitor ]
* Apply multi-arch hints.
+ smalt-examples: Add Multi-Arch: foreign.
.
[ Andreas Tille ]
* Drop unneeded debian/install
* Make sure sequenceReverseComplement_test is created even if
DEB_BUILD_OPTIONS=nocheck is set
Closes: #985071
* Standards-Version: 4.6.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Repository.
* watch file standard 4 (routine-update)
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