Your message dated Wed, 02 Feb 2022 16:06:50 +0000
with message-id <[email protected]>
and subject line Bug#1004747: fixed in r-base 4.1.2-2
has caused the Debian Bug report #1004747,
regarding r-base: Please include patch to fix build on alpha
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1004747: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1004747
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: r-base
Version: 4.1.2-1
Severity: normal
User: [email protected]
Usertags: alpha
X-Debbugs-Cc: [email protected],[email protected]
Hi!
r-base currently FTBFS on alpha with:
gfortran -fno-optimize-sibling-calls -fpic -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -c xxxpr.f -o xxxpr.o
gcc -std=gnu99 -shared -fopenmp -Wl,-z,relro -o libR.so CommandLineArgs.o
Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o
array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o
connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o
dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o
eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o
inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o
logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o
patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o
printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o
relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o
sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o
times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o
g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o`
../extra/tre/libtre.a -lblas -lgfortran -lm -lreadline -lpcre2-8 -llzma
-lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n
platform.o: in function `machar':
./src/main/machar.c:128:(.text+0x21dc): relocation truncated to fit: GPREL16
against `.rodata.cst16'
../nmath/pnchisq.o: in function `Rf_pnchisq_raw':
./src/nmath/pnchisq.c:125:(.text+0x48c): relocation truncated to fit: GPREL16
against `.rodata.cst16'
./src/nmath/pnchisq.c:230:(.text+0x818): relocation truncated to fit: GPREL16
against `.rodata.cst16'
./src/nmath/pnchisq.c:230:(.text+0xb08): relocation truncated to fit: GPREL16
against `.rodata.cst16'
collect2: error: ld returned 1 exit status
Adrian Bunk found out that this is an issue of linking with -fpic instead of
-fPIC. Adjusting the
flags fixes the linker error. Attaching a patch which patches both configure.ac
and configure. The
latter is necessary since the package currently doesn't regenerate the
configure before build auto-
matically.
Thanks,
Adrian
--
.''`. John Paul Adrian Glaubitz
: :' : Debian Developer - [email protected]
`. `' Freie Universitaet Berlin - [email protected]
`- GPG: 62FF 8A75 84E0 2956 9546 0006 7426 3B37 F5B5 F913
Index: r-base-4.1.2/configure.ac
===================================================================
--- r-base-4.1.2.orig/configure.ac
+++ r-base-4.1.2/configure.ac
@@ -1316,7 +1316,7 @@ if test "${GCC}" = yes; then
## has 32k and so can use -fpic.
## However, although the gcc docs do not mention it, it seems s390/s390x
## also supports and needs -fPIC
- sparc*|ppc64*|powerpc64*|s390*)
+ alpha*|sparc*|ppc64*|powerpc64*|s390*)
cpicflags="-fPIC"
;;
*)
@@ -1327,7 +1327,7 @@ if test "${GCC}" = yes; then
fi
if test "${ac_cv_fc_compiler_gnu}" = yes; then
case "${host_cpu}" in
- sparc*|ppc64*|powerpc64*|s390*)
+ alpha*|sparc*|ppc64*|powerpc64*|s390*)
fpicflags="-fPIC"
;;
*)
@@ -1343,7 +1343,7 @@ case "${FC}" in
esac
if test "${GXX}" = yes; then
case "${host_cpu}" in
- sparc*|ppc64*|powerpc64*|s390*)
+ alpha*|sparc*|ppc64*|powerpc64*|s390*)
cxxpicflags="-fPIC"
;;
*)
Index: r-base-4.1.2/configure
===================================================================
--- r-base-4.1.2.orig/configure
+++ r-base-4.1.2/configure
@@ -28883,7 +28883,7 @@ if test "${GCC}" = yes; then
## has 32k and so can use -fpic.
## However, although the gcc docs do not mention it, it seems s390/s390x
## also supports and needs -fPIC
- sparc*|ppc64*|powerpc64*|s390*)
+ alpha*|sparc*|ppc64*|powerpc64*|s390*)
cpicflags="-fPIC"
;;
*)
@@ -28894,7 +28894,7 @@ if test "${GCC}" = yes; then
fi
if test "${ac_cv_fc_compiler_gnu}" = yes; then
case "${host_cpu}" in
- sparc*|ppc64*|powerpc64*|s390*)
+ alpha*|sparc*|ppc64*|powerpc64*|s390*)
fpicflags="-fPIC"
;;
*)
@@ -28910,7 +28910,7 @@ case "${FC}" in
esac
if test "${GXX}" = yes; then
case "${host_cpu}" in
- sparc*|ppc64*|powerpc64*|s390*)
+ alpha*|sparc*|ppc64*|powerpc64*|s390*)
cxxpicflags="-fPIC"
;;
*)
--- End Message ---
--- Begin Message ---
Source: r-base
Source-Version: 4.1.2-2
Done: Dirk Eddelbuettel <[email protected]>
We believe that the bug you reported is fixed in the latest version of
r-base, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dirk Eddelbuettel <[email protected]> (supplier of updated r-base package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 02 Feb 2022 07:17:35 -0600
Source: r-base
Architecture: source
Version: 4.1.2-2
Distribution: unstable
Urgency: medium
Maintainer: Dirk Eddelbuettel <[email protected]>
Changed-By: Dirk Eddelbuettel <[email protected]>
Closes: 1004747
Changes:
r-base (4.1.2-2) unstable; urgency=medium
.
* debian/patches/use-fPIC-on-alpha: Applying patch to permit build on
alpha platform also by now applied upstream (Closes:
#1004747)
* debian/patches/series: Activated patch
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