Your message dated Sun, 20 Feb 2022 21:04:03 +0000
with message-id <[email protected]>
and subject line Bug#1000782: fixed in plink2 2.00~a3-220218+dfsg-1
has caused the Debian Bug report #1000782,
regarding plink2: autopkgtest regression: Segmentation fault
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1000782: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1000782
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: plink2
Version: 2.00~a3-211011+dfsg-1
X-Debbugs-CC: [email protected]
Severity: serious
User: [email protected]
Usertags: regression
Dear maintainer(s),
With a recent upload of plink2 the autopkgtest of plink2 fails in
testing when that autopkgtest is run with the binary packages of plink2
from unstable. It passes when run with only packages from testing. In
tabular form:
pass fail
plink2 from testing 2.00~a3-211011+dfsg-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=plink2
https://ci.debian.net/data/autopkgtest/testing/amd64/p/plink2/17088127/log.gz
PLINK v2.00a3 SSE4.2 (11 Oct 2021)
www.cog-genomics.org/plink/2.0/
(C) 2005-2021 Shaun Purcell, Christopher Chang GNU General Public
License v3
Logging to tmp_data.log.
Options in effect:
--dummy 33 65537 0.1 dosage-freq=0.1
--out tmp_data
Start time: Sun Nov 28 11:11:17 2021
257840 MiB RAM detected; reserving 128920 MiB for main workspace.
Using up to 48 threads (change this with --threads).
--dummy: 65k variants written.
Dummy data (33 samples, 65537 SNPs) written to tmp_data.pgen +
tmp_data.pvar +
tmp_data.psam .
End time: Sun Nov 28 11:11:17 2021
/usr/bin/plink2: line 8: 1566 Segmentation fault "${cmd}" "$@"
autopkgtest [11:11:17]: test run-sample-analysis
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: plink2
Source-Version: 2.00~a3-220218+dfsg-1
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
plink2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated plink2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 20 Feb 2022 21:36:16 +0100
Source: plink2
Architecture: source
Version: 2.00~a3-220218+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1000782 1004037
Changes:
plink2 (2.00~a3-220218+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
Closes: #1000782, #1004037
* Standards-Version: 4.6.0 (routine-update)
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