Your message dated Mon, 11 Jul 2022 22:19:07 +0000
with message-id <[email protected]>
and subject line Bug#1012978: fixed in libgenome 1.3.11+svn20110227.4616-5
has caused the Debian Bug report #1012978,
regarding libgenome: ftbfs with GCC-12
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1012978: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1012978
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:libgenome
Version: 1.3.11+svn20110227.4616-4
Severity: normal
Tags: sid bookworm
User: [email protected]
Usertags: ftbfs-gcc-12
[This bug is targeted to the upcoming bookworm release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-12/g++-12, but succeeds to build with gcc-11/g++-11. The
severity of this report will be raised before the bookworm release.
The full build log can be found at:
http://qa-logs.debian.net/2022/06/09/gcc12/libgenome_1.3.11+svn20110227.4616-4_unstable_gcc12.log
The last lines of the build log are at the end of this report.
To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-11/porting_to.html
GCC 11 defaults to the GNU++17 standard. If your package installs
header files in /usr/include, please don't work around C++17 issues
by choosing a lower C++ standard for the package build, but fix these
issues to build with the C++17 standard.
[...]
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see
diff output below
dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols
file: see diff output below
dpkg-gensymbols: warning: debian/libgenome0/DEBIAN/symbols doesn't match
completely debian/libgenome0.symbols.amd64
--- debian/libgenome0.symbols.amd64 (libgenome0_1.3.11+svn20110227.4616-4_amd64)
+++ dpkg-gensymbolsX2tVHu 2022-06-10 09:07:50.462671163 +0000
@@ -627,23 +627,23 @@
_ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base
1.3.11+svn20110227.4616
_ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base
1.3.11+svn20110227.4616
-
_ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base
1.3.11+svn20110227.4616
+#MISSING: 1.3.11+svn20110227.4616-4#
_ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIN6genome10gnLocationESaIS1_EED1Ev@Base 1.3.11+svn20110227.4616
_ZNSt6vectorIN6genome10gnLocationESaIS1_EED2Ev@Base 1.3.11+svn20110227.4616
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base
1.3.11+svn20110227.4616
-
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base
1.3.11+svn20110227.4616
-
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base
1.3.11+svn20110227.4616
+#MISSING: 1.3.11+svn20110227.4616-4#
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base
1.3.11+svn20110227.4616
+#MISSING: 1.3.11+svn20110227.4616-4#
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base
1.3.11+svn20110227.4616
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base
1.3.11+svn20110227.4616
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base
1.3.11+svn20110227.4616
(optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
(optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
-
_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base
1.3.11+svn20110227.4616
+#MISSING: 1.3.11+svn20110227.4616-4#
_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
-
_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base
1.3.11+svn20110227.4616
+#MISSING: 1.3.11+svn20110227.4616-4#
_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
- _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base
1.3.11+svn20110227.4616
+#MISSING: 1.3.11+svn20110227.4616-4#
_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
@@ -651,21 +651,22 @@
_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base
1.3.11+svn20110227.4616
- _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_@Base
1.3.11+svn20110227.4616
+#MISSING: 1.3.11+svn20110227.4616-4#
_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base
1.3.11+svn20110227.4616
_ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base
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_ZNSt7__cxx1110_List_baseINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_clearEv@Base
1.3.11+svn20110227.4616
_ZNSt7__cxx1110_List_baseIPKN6genome12gnBaseFilterESaIS4_EE8_M_clearEv@Base
1.3.11+svn20110227.4616
-
(optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base
1.3.11+svn20110227.4616
+#MISSING: 1.3.11+svn20110227.4616-4#
(optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base
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_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base
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_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base
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_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE16_M_insert_uniqueISB_EES6_ISt17_Rb_tree_iteratorISB_EbEOT_@Base
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1.3.11+svn20110227.4616
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base
1.3.11+svn20110227.4616
+#MISSING: 1.3.11+svn20110227.4616-4#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base
1.3.11+svn20110227.4616
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base
1.3.11+svn20110227.4616
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base
1.3.11+svn20110227.4616
+ _ZSt16__do_uninit_copyIPKN6genome10gnLocationEPS1_ET0_T_S6_S5_@Base
1.3.11+svn20110227.4616-4
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EES5_RKS8_@Base
1.3.11+svn20110227.4616
_ZTIN6genome10gnBaseSpecE@Base 1.3.11+svn20110227.4616
_ZTIN6genome10gnLocationE@Base 1.3.11+svn20110227.4616
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:6: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: libgenome
Source-Version: 1.3.11+svn20110227.4616-5
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libgenome, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated libgenome package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 11 Jul 2022 23:43:37 +0200
Source: libgenome
Architecture: source
Version: 1.3.11+svn20110227.4616-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1012978
Changes:
libgenome (1.3.11+svn20110227.4616-5) unstable; urgency=medium
.
* d/libgenome0.symbols.amd64: mark some compiler specific symbols optional.
Closes: #1012978
* Standards-Version: 4.6.1 (routine-update)
* d/control: add myself to uploaders.
Checksums-Sha1:
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libgenome_1.3.11+svn20110227.4616-5.dsc
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libgenome_1.3.11+svn20110227.4616-5.debian.tar.xz
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Files:
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libgenome_1.3.11+svn20110227.4616-5.dsc
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--- End Message ---
