Your message dated Tue, 01 Nov 2022 08:34:43 +0000
with message-id <[email protected]>
and subject line Bug#1022354: fixed in cctbx 2022.9+ds2+~3.11.2+ds1-4
has caused the Debian Bug report #1022354,
regarding cctbx: FTBFS: dpkg-source: error: aborting due to unexpected upstream
changes, see /tmp/cctbx_2022.9+ds2+~3.11.2+ds1-3.diff.lOjzg7
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1022354: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1022354
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: cctbx
Version: 2022.9+ds2+~3.11.2+ds1-3
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: [email protected]
Usertags: ftbfs-20221023 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> cp -f debian/setup.py setup.py
> cp -r debian/annlib_adaptbx annlib_adaptbx
> mkdir annlib
> cp -r debian/ccp4io_adaptbx ccp4io_adaptbx
> mkdir ccp4io
> cp -r debian/gui_resources gui_resources
> dh_auto_clean
> install -d
> /<<BUILDDIR>>/cctbx-2022.9\+ds2\+\~3.11.2\+ds1/debian/.debhelper/generated/_source/home
> pybuild --clean -i python{version} -p 3.10
> I: pybuild base:240: python3.10 setup.py clean
> running clean
> removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build' (and everything
> under it)
> 'build/bdist.linux-x86_64' does not exist -- can't clean it
> 'build/scripts-3.10' does not exist -- can't clean it
> rm -rf .pybuild/
> find . -name \*.pyc -exec rm {} \;
> find . -name __pycache__ -type d -exec rm -rf {} \;
> rm -f setup.py
> rm -rf annlib annlib_adaptbx
> rm -rf ccp4io ccp4io_adaptbx
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_autoreconf_clean -O--buildsystem=pybuild
> dh_clean -O--buildsystem=pybuild
> rm -f debian/debhelper-build-stamp
> rm -rf debian/.debhelper/
> rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars
> debian/python3-cctbx.substvars debian/files
> rm -fr -- debian/libcctbx0/ debian/tmp/ debian/libcctbx-dev/
> debian/python3-cctbx/
> find . \( \( \
> \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path
> .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o
> -type f -a \
> \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
> -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
> -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
> -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
> \) -exec rm -f {} + \) -o \
> \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \)
> \)
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building cctbx using existing
> ./cctbx_2022.9+ds2+~3.11.2+ds1.orig-dxtbx.tar.xz
> dpkg-source: info: building cctbx using existing
> ./cctbx_2022.9+ds2+~3.11.2+ds1.orig.tar.xz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: warning: ignoring deletion of file dox/Doxyfile.orig, use
> --include-removal to override
> dpkg-source: info: local changes detected, the modified files are:
> cctbx-2022.9+ds2+~3.11.2+ds1/gui_resources/ucs-fonts/10x20.bdf
> cctbx-2022.9+ds2+~3.11.2+ds1/gui_resources/ucs-fonts/8x13.bdf
> cctbx-2022.9+ds2+~3.11.2+ds1/gui_resources/ucs-fonts/9x15.bdf
> cctbx-2022.9+ds2+~3.11.2+ds1/gui_resources/ucs-fonts/README
> dpkg-source: error: aborting due to unexpected upstream changes, see
> /tmp/cctbx_2022.9+ds2+~3.11.2+ds1-3.diff.lOjzg7
> dpkg-source: info: Hint: make sure the version in debian/changelog matches
> the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source
> --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
> --------------------------------------------------------------------------------
> Build finished at 2022-10-23T07:34:02Z
The full build log is available from:
http://qa-logs.debian.net/2022/10/23/cctbx_2022.9+ds2+~3.11.2+ds1-3_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20221023;[email protected]
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20221023&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: cctbx
Source-Version: 2022.9+ds2+~3.11.2+ds1-4
Done: Picca Frédéric-Emmanuel <[email protected]>
We believe that the bug you reported is fixed in the latest version of
cctbx, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Picca Frédéric-Emmanuel <[email protected]> (supplier of updated cctbx package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 01 Nov 2022 08:54:57 +0100
Source: cctbx
Architecture: source
Version: 2022.9+ds2+~3.11.2+ds1-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Picca Frédéric-Emmanuel <[email protected]>
Closes: 1022354
Changes:
cctbx (2022.9+ds2+~3.11.2+ds1-4) unstable; urgency=medium
.
* d/rules: remove also the gui_resources in the clean target
Bug fix: "FTBFS: dpkg-source: error: aborting due to unexpected
upstream changes, see
/tmp/cctbx_2022.9+ds2+~3.11.2+ds1-3.diff.lOjzg7", thanks to Lucas
Nussbaum (Closes: #1022354).
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