Your message dated Fri, 25 Nov 2022 10:40:25 +0000
with message-id <e1oyw89-000gkr...@fasolo.debian.org>
and subject line Bug#1022570: fixed in t-coffee
13.45.0.4846264+really13.41.0.28bdc39+dfsg-1
has caused the Debian Bug report #1022570,
regarding t-coffee regression -- segfaults for cases that files that worked
with previous release
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1022570: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1022570
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-biopython
Version: 1.79+dfsg-3
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20221023 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> mkdir -p Tests_avoid
> for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool
> PopGen_GenePop PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth
> mmtf mmtf_online BioSQL_MySQLdb BioSQL_psycopg2 \
> ; do \
> mv Tests/test_${avoid}.py Tests_avoid ; \
> done
> mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory
> # For the doc package we need a clean testsuite without all the remaining
> files. So keep a clean copy here
> mkdir -p debian/tmp_tests
> cp -a Tests debian/tmp_tests
> # remove duplicated file
> rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz
> # We also keep the tests we need to avoid for later inspection
> cp -a Tests_avoid debian/tmp_tests
> # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the
> test is verifying this dir
> # to run the EMBOSS test test_Emboss also requires to have the environment
> variable EMBOSS_ROOT set
> LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \
> --test-args='set -e; \
> mkdir -p {build_dir}/home; \
> mkdir -p {build_dir}/Doc/examples; \
> cp -a Doc/Tutorial.tex {build_dir}/Doc; \
> cp -a Doc/Tutorial {build_dir}/Doc; \
> cp -a Doc/examples {build_dir}/Doc; \
> cp -a Tests {build_dir}; \
> cd {build_dir}/Tests; \
> env DIALIGN2_DIR=/usr/share/dialign
> EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py
> --offline'
> pybuild --test -i python{version} -p 3.10 --test --system=custom
> "--test-args=set -e; \\\
> mkdir -p {build_dir}/home; \\\
> mkdir -p {build_dir}/Doc/examples; \\\
> cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\
> cp -a Doc/Tutorial {build_dir}/Doc; \\\
> cp -a Doc/examples {build_dir}/Doc; \\\
> cp -a Tests {build_dir}; \\\
> cd {build_dir}/Tests; \\\
> env DIALIGN2_DIR=/usr/share/dialign
> EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py
> --offline"
> I: pybuild base:240: set -e; \
> mkdir -p
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/home; \
> mkdir -p
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Doc/examples; \
> cp -a Doc/Tutorial.tex
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Doc; \
> cp -a Doc/Tutorial
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Doc; \
> cp -a Doc/examples
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Doc; \
> cp -a Tests
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build; \
> cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Tests; \
> env DIALIGN2_DIR=/usr/share/dialign
> EMBOSS_ROOT=/usr/lib/emboss
> HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/home python3.10
> run_tests.py --offline
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Tests/run_tests.py:33:
> DeprecationWarning: The distutils package is deprecated and slated for
> removal in Python 3.12. Use setuptools or check PEP 632 for potential
> alternatives
> import distutils.util
> /usr/lib/python3/dist-packages/_distutils_hack/__init__.py:18: UserWarning:
> Distutils was imported before Setuptools, but importing Setuptools also
> replaces the `distutils` module in `sys.modules`. This may lead to
> undesirable behaviors or errors. To avoid these issues, avoid using distutils
> directly, ensure that setuptools is installed in the traditional way (e.g.
> not an editable install), and/or make sure that setuptools is always imported
> before distutils.
> warnings.warn(
> /usr/lib/python3/dist-packages/_distutils_hack/__init__.py:33: UserWarning:
> Setuptools is replacing distutils.
> warnings.warn("Setuptools is replacing distutils.")
> test_Ace ... ok
> test_Affy ... ok
> test_AlignIO ... ok
> test_AlignIO_ClustalIO ... ok
> test_AlignIO_EmbossIO ... ok
> test_AlignIO_FastaIO ... ok
> test_AlignIO_MauveIO ... ok
> test_AlignIO_PhylipIO ... ok
> test_AlignIO_convert ... ok
> test_AlignInfo ... ok
> test_Application ... ok
> test_BWA_tool ... ok
> test_BioSQL_MySQLdb_online ... skipping. internet not available
> test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file
> biosql.ini missing (see biosql.ini.sample)
> test_BioSQL_mysql_connector_online ... skipping. internet not available
> test_BioSQL_psycopg2_online ... skipping. internet not available
> test_BioSQL_sqlite3 ... ok
> test_BioSQL_sqlite3_online ... skipping. internet not available
> test_Blast_Record ... ok
> test_CAPS ... ok
> test_Chi2 ... ok
> test_ClustalOmega_tool ... ok
> test_Clustalw_tool ... ok
> test_Cluster ... ok
> test_CodonTable ... ok
> test_ColorSpiral ... ok
> test_Compass ... ok
> test_Consensus ... ok
> test_Dialign_tool ... ok
> test_EMBL_unittest ... ok
> test_Emboss ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256:
> BiopythonWarning: Non-standard molecule type: mRNA
> warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning)
> ok
> test_EmbossPrimer ... ok
> test_Entrez ... ok
> test_Entrez_online ... skipping. internet not available
> test_Entrez_parser ... ok
> test_Enzyme ... ok
> test_ExPASy ... skipping. internet not available
> test_Fasttree_tool ... ok
> test_File ... ok
> test_GenBank ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256:
> BiopythonWarning: Non-standard molecule type: genomic DNA
> warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning)
> ok
> test_GenomeDiagram ... Warn: Can't find .pfb for face 'Times-Roman'
> ok
> test_GraphicsBitmaps ... skipping. Check the fonts needed by ReportLab if you
> want bitmaps from Bio.Graphics
> Error in setFont('Times-Roman',10) missing the T1 files?
> Originally <class 'TypeError'>: makeT1Font() argument 2 must be str, not None
> test_GraphicsChromosome ... ok
> test_GraphicsDistribution ... ok
> test_GraphicsGeneral ... ok
> test_HMMCasino ... ok
> test_HMMGeneral ... ok
> test_KEGG ... ok
> test_KEGG_online ... skipping. internet not available
> test_KGML_graphics ... ok
> test_KGML_graphics_online ... skipping. internet not available
> test_KGML_nographics ... ok
> test_KeyWList ... ok
> test_LogisticRegression ... ok
> test_MafIO_index ... ok
> test_Mafft_tool ... ok
> test_MarkovModel ... ok
> test_Medline ... ok
> test_Muscle_tool ... skipping. Install MUSCLE if you want to use the
> Bio.Align.Applications wrapper.
> test_NCBITextParser ... ok
> test_NCBIXML ... ok
> test_NCBI_BLAST_tools ... ok
> test_NCBI_qblast ... ok
> test_NMR ... ok
> test_NaiveBayes ... ok
> test_Nexus ... ok
> test_PAML_baseml ... ok
> test_PAML_codeml ... ok
> test_PAML_yn00 ... ok
> test_PDBList ... skipping. internet not available
> test_PDB_DSSP ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252:
> UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to
> see if there is a match
>
> warnings.warn(err)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252:
> UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to
> see if there is a match
>
> warnings.warn(err)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252:
> UserWarning: Invalid mmCIF file use --verbose option to see errors
>
> warnings.warn(err)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252:
> UserWarning: Invalid mmCIF file use --verbose option to see errors
>
> warnings.warn(err)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252:
> UserWarning: Invalid mmCIF file use --verbose option to see errors
>
> warnings.warn(err)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252:
> UserWarning: Invalid mmCIF file use --verbose option to see errors
>
> warnings.warn(err)
> ok
> test_PDB_Dice ... ok
> test_PDB_Disordered ... ok
> test_PDB_Exposure ... ok
> test_PDB_FragmentMapper ... ok
> test_PDB_KDTree ... ok
> test_PDB_MMCIF2Dict ... ok
> test_PDB_MMCIFIO ... ok
> test_PDB_MMCIFParser ... ok
> test_PDB_NACCESS ... ok
> test_PDB_PDBIO ... ok
> test_PDB_PDBParser ... ok
> test_PDB_Polypeptide ... ok
> test_PDB_SASA ... ok
> test_PDB_SMCRA ... ok
> test_PDB_StructureAlignment ... ok
> test_PDB_Superimposer ... ok
> test_PDB_internal_coords ... ok
> test_PDB_parse_pdb_header ... ok
> test_PDB_vectors ... ok
> test_PQR ... ok
> test_Pathway ... ok
> test_Phd ... ok
> test_Phylo ... ok
> test_PhyloXML ... ok
> test_Phylo_CDAO ... ok
> test_Phylo_NeXML ... ok
> test_Phylo_matplotlib ... ok
> test_Phylo_networkx ... ok
> test_PopGen_GenePop_nodepend ... ok
> test_Prank_tool ... ok
> test_Probcons_tool ... ok
> test_ProtParam ... ok
> test_QCPSuperimposer ... ok
> test_RCSBFormats ... ok
> test_Restriction ... ok
> test_SCOP_Astral ... ok
> test_SCOP_Cla ... ok
> test_SCOP_Des ... ok
> test_SCOP_Dom ... ok
> test_SCOP_Hie ... ok
> test_SCOP_Raf ... ok
> test_SCOP_Residues ... ok
> test_SCOP_Scop ... ok
> test_SCOP_online ... skipping. internet not available
> test_SVDSuperimposer ... ok
> test_SearchIO_blast_tab ... ok
> test_SearchIO_blast_tab_index ... ok
> test_SearchIO_blast_text ... ok
> test_SearchIO_blast_xml ... ok
> test_SearchIO_blast_xml_index ... ok
> test_SearchIO_blat_psl ... ok
> test_SearchIO_blat_psl_index ... ok
> test_SearchIO_exonerate ... ok
> test_SearchIO_exonerate_text_index ... ok
> test_SearchIO_exonerate_vulgar_index ... ok
> test_SearchIO_fasta_m10 ... ok
> test_SearchIO_fasta_m10_index ... ok
> test_SearchIO_hhsuite2_text ... ok
> test_SearchIO_hmmer2_text ... ok
> test_SearchIO_hmmer2_text_index ... ok
> test_SearchIO_hmmer3_domtab ... ok
> test_SearchIO_hmmer3_domtab_index ... ok
> test_SearchIO_hmmer3_tab ... ok
> test_SearchIO_hmmer3_tab_index ... ok
> test_SearchIO_hmmer3_text ... ok
> test_SearchIO_hmmer3_text_index ... ok
> test_SearchIO_interproscan_xml ... ok
> test_SearchIO_legacy ... ok
> test_SearchIO_model ... ok
> test_SearchIO_write ... ok
> test_SeqFeature ... ok
> test_SeqIO ... ok
> test_SeqIO_AbiIO ... ok
> test_SeqIO_FastaIO ... ok
> test_SeqIO_Gck ... ok
> test_SeqIO_Insdc ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/GenBank/Scanner.py:303:
> BiopythonParserWarning: Non-standard feature line wrapping (didn't break on
> comma)?
> warnings.warn(
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256:
> BiopythonWarning: Non-standard molecule type: mRNA
> warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256:
> BiopythonWarning: Non-standard molecule type: unassigned DNA
> warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256:
> BiopythonWarning: Non-standard molecule type: genomic DNA
> warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning)
> ok
> test_SeqIO_NibIO ... ok
> test_SeqIO_PdbIO ... ok
> test_SeqIO_QualityIO ... ok
> test_SeqIO_SeqXML ... ok
> test_SeqIO_SnapGene ... ok
> test_SeqIO_TwoBitIO ... ok
> test_SeqIO_Xdna ... ok
> test_SeqIO_features ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256:
> BiopythonWarning: Non-standard molecule type: unassigned DNA
> warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256:
> BiopythonWarning: Non-standard molecule type: genomic DNA
> warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256:
> BiopythonWarning: Non-standard molecule type: mRNA
> warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:548:
> BiopythonWarning: Annotation 'swissprot: locus SCX3_BUTOC, accession P01485;
> class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986.
> annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence
> databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro
> IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505' too
> long for 'DBSOURCE' line
> warnings.warn(
> ok
> test_SeqIO_index ... ok
> test_SeqIO_online ... skipping. internet not available
> test_SeqIO_write ... ok
> test_SeqRecord ... ok
> test_SeqUtils ... ok
> test_Seq_objs ... ok
> test_SffIO ... ok
> test_SubsMat ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/SubsMat/__init__.py:126:
> BiopythonDeprecationWarning: Bio.SubsMat has been deprecated, and we intend
> to remove it in a future release of Biopython. As an alternative, please
> consider using Bio.Align.substitution_matrices as a replacement, and contact
> the Biopython developers if you still need the Bio.SubsMat module.
> warnings.warn(
> ok
> test_SwissProt ... ok
> test_TCoffee_tool ... FAIL
> test_TogoWS ... skipping. internet not available
> test_TreeConstruction ... ok
> test_Tutorial ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/Seq.py:2008:
> BiopythonDeprecationWarning: UnknownSeq(length) is deprecated; please use
> Seq(None, length) instead.
> warnings.warn(
> ok
> test_UniGene ... ok
> test_UniProt_GOA ... ok
> test_Uniprot ... ok
> test_Wise ... ok
> test_align ... ok
> test_align_substitution_matrices ... ok
> test_bgzf ... ok
> test_cellosaurus ... ok
> test_codonalign ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/codonalign/codonalignment.py:113:
> BiopythonWarning: Please make sure the two CodonAlignment objects are
> sharing the same codon table. This is not checked by Biopython.
> warnings.warn(
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/Seq.py:2954:
> BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP
> and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be
> translated as amino acid.
> warnings.warn(
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py:612:
> BiopythonWarning: start codon of pro1 (S 0) does not correspond to pro1 (TCA)
> warnings.warn(
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py:678:
> BiopythonWarning: start codon of pro2(S 0) does not correspond to pro2(TCA)
> warnings.warn(
> ok
> test_geo ... ok
> test_kNN ... ok
> test_motifs ... ok
> test_motifs_online ... skipping. internet not available
> test_pairwise2 ... ok
> test_pairwise2_no_C ... ok
> test_pairwise_aligner ... ok
> test_pairwise_alignment_map ... ok
> test_phenotype ... ok
> test_phenotype_fit ... ok
> test_phyml_tool ... ok
> test_prodoc ... ok
> test_prosite ... ok
> test_psw ... ok
> test_raxml_tool ... ok
> test_samtools_tool ... ok
> test_seq ... ok
> test_translate ... ok
> Bio docstring test ... ok
> Bio.Affy docstring test ... ok
> Bio.Affy.CelFile docstring test ... ok
> Bio.Align docstring test ... ok
> Bio.Align.AlignInfo docstring test ... ok
> Bio.Align.Applications docstring test ... ok
> Bio.Align.Applications._ClustalOmega docstring test ... ok
> Bio.Align.Applications._Clustalw docstring test ... ok
> Bio.Align.Applications._Dialign docstring test ... ok
> Bio.Align.Applications._MSAProbs docstring test ... ok
> Bio.Align.Applications._Mafft docstring test ... ok
> Bio.Align.Applications._Muscle docstring test ... ok
> Bio.Align.Applications._Prank docstring test ... ok
> Bio.Align.Applications._Probcons docstring test ... ok
> Bio.Align.Applications._TCoffee docstring test ... ok
> Bio.Align._aligners docstring test ... ok
> Bio.Align.substitution_matrices docstring test ... ok
> Bio.AlignIO docstring test ... ok
> Bio.AlignIO.ClustalIO docstring test ... ok
> Bio.AlignIO.EmbossIO docstring test ... ok
> Bio.AlignIO.FastaIO docstring test ... ok
> Bio.AlignIO.Interfaces docstring test ... ok
> Bio.AlignIO.MafIO docstring test ... ok
> Bio.AlignIO.MauveIO docstring test ... ok
> Bio.AlignIO.MsfIO docstring test ... ok
> Bio.AlignIO.NexusIO docstring test ... ok
> Bio.AlignIO.PhylipIO docstring test ... ok
> Bio.AlignIO.StockholmIO docstring test ... ok
> Bio.Application docstring test ... ok
> Bio.Blast docstring test ... ok
> Bio.Blast.Applications docstring test ... ok
> Bio.Blast.NCBIWWW docstring test ... ok
> Bio.Blast.NCBIXML docstring test ... ok
> Bio.Blast.ParseBlastTable docstring test ... ok
> Bio.Blast.Record docstring test ... ok
> Bio.CAPS docstring test ... ok
> Bio.Cluster docstring test ... ok
> Bio.Cluster._cluster docstring test ... ok
> Bio.Compass docstring test ... ok
> Bio.Data docstring test ... ok
> Bio.Data.CodonTable docstring test ... ok
> Bio.Data.IUPACData docstring test ... ok
> Bio.Data.SCOPData docstring test ... ok
> Bio.Emboss docstring test ... ok
> Bio.Emboss.Applications docstring test ... ok
> Bio.Emboss.Primer3 docstring test ... ok
> Bio.Emboss.PrimerSearch docstring test ... ok
> Bio.Entrez.Parser docstring test ... ok
> Bio.ExPASy.Enzyme docstring test ... ok
> Bio.ExPASy.Prodoc docstring test ... ok
> Bio.ExPASy.Prosite docstring test ... ok
> Bio.ExPASy.ScanProsite docstring test ... ok
> Bio.ExPASy.cellosaurus docstring test ... ok
> Bio.File docstring test ... ok
> Bio.GenBank docstring test ... ok
> Bio.GenBank.Record docstring test ... ok
> Bio.GenBank.Scanner docstring test ... ok
> Bio.GenBank.utils docstring test ... ok
> Bio.Geo docstring test ... ok
> Bio.Geo.Record docstring test ... ok
> Bio.Graphics docstring test ... ok
> Bio.Graphics.BasicChromosome docstring test ... ok
> Bio.Graphics.ColorSpiral docstring test ... ok
> Bio.Graphics.Comparative docstring test ... ok
> Bio.Graphics.DisplayRepresentation docstring test ... ok
> Bio.Graphics.Distribution docstring test ... ok
> Bio.Graphics.GenomeDiagram docstring test ... ok
> Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok
> Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok
> Bio.Graphics.GenomeDiagram._Colors docstring test ... ok
> Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok
> Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok
> Bio.Graphics.GenomeDiagram._Feature docstring test ... ok
> Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok
> Bio.Graphics.GenomeDiagram._Graph docstring test ... ok
> Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok
> Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok
> Bio.Graphics.GenomeDiagram._Track docstring test ... ok
> Bio.Graphics.KGML_vis docstring test ... ok
> Bio.HMM docstring test ... ok
> Bio.HMM.DynamicProgramming docstring test ... ok
> Bio.HMM.MarkovModel docstring test ... ok
> Bio.HMM.Trainer docstring test ... ok
> Bio.HMM.Utilities docstring test ... ok
> Bio.KEGG docstring test ... ok
> Bio.KEGG.Compound docstring test ... ok
> Bio.KEGG.Enzyme docstring test ... ok
> Bio.KEGG.Gene docstring test ... ok
> Bio.KEGG.KGML docstring test ... ok
> Bio.KEGG.KGML.KGML_parser docstring test ... ok
> Bio.KEGG.KGML.KGML_pathway docstring test ... ok
> Bio.KEGG.Map docstring test ... ok
> Bio.KEGG.REST docstring test ... ok
> Bio.LogisticRegression docstring test ... ok
> Bio.MarkovModel docstring test ... ok
> Bio.MaxEntropy docstring test ... ok
> Bio.Medline docstring test ... ok
> Bio.NMR docstring test ... ok
> Bio.NMR.NOEtools docstring test ... ok
> Bio.NMR.xpktools docstring test ... ok
> Bio.NaiveBayes docstring test ... ok
> Bio.Nexus docstring test ... ok
> Bio.Nexus.Nexus docstring test ... ok
> Bio.Nexus.Nodes docstring test ... ok
> Bio.Nexus.StandardData docstring test ... ok
> Bio.Nexus.Trees docstring test ... ok
> Bio.Nexus.cnexus docstring test ... ok
> Bio.PDB docstring test ... ok
> Bio.PDB.AbstractPropertyMap docstring test ... ok
> Bio.PDB.Atom docstring test ... ok
> Bio.PDB.Chain docstring test ... ok
> Bio.PDB.DSSP docstring test ... ok
> Bio.PDB.Dice docstring test ... ok
> Bio.PDB.Entity docstring test ... ok
> Bio.PDB.FragmentMapper docstring test ... ok
> Bio.PDB.HSExposure docstring test ... ok
> Bio.PDB.MMCIF2Dict docstring test ... ok
> Bio.PDB.MMCIFParser docstring test ... ok
> Bio.PDB.Model docstring test ... ok
> Bio.PDB.NACCESS docstring test ... ok
> Bio.PDB.NeighborSearch docstring test ... ok
> Bio.PDB.PDBExceptions docstring test ... ok
> Bio.PDB.PDBIO docstring test ... ok
> Bio.PDB.PDBList docstring test ... ok
> Bio.PDB.PDBParser docstring test ... ok
> Bio.PDB.PICIO docstring test ... ok
> Bio.PDB.PSEA docstring test ... ok
> Bio.PDB.Polypeptide docstring test ... ok
> Bio.PDB.QCPSuperimposer docstring test ... ok
> Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok
> Bio.PDB.Residue docstring test ... ok
> Bio.PDB.ResidueDepth docstring test ... ok
> Bio.PDB.SASA docstring test ... ok
> Bio.PDB.SCADIO docstring test ... ok
> Bio.PDB.Selection docstring test ... ok
> Bio.PDB.Structure docstring test ... ok
> Bio.PDB.StructureAlignment docstring test ... ok
> Bio.PDB.StructureBuilder docstring test ... ok
> Bio.PDB.Superimposer docstring test ... ok
> Bio.PDB.ic_data docstring test ... ok
> Bio.PDB.ic_rebuild docstring test ... ok
> Bio.PDB.internal_coords docstring test ... ok
> Bio.PDB.kdtrees docstring test ... ok
> Bio.PDB.mmcifio docstring test ... ok
> Bio.PDB.mmtf docstring test ... ok
> Bio.PDB.mmtf.DefaultParser docstring test ... ok
> Bio.PDB.mmtf.mmtfio docstring test ... ok
> Bio.PDB.parse_pdb_header docstring test ... ok
> Bio.PDB.vectors docstring test ... ok
> Bio.Pathway docstring test ... ok
> Bio.Pathway.Rep docstring test ... ok
> Bio.Pathway.Rep.Graph docstring test ... ok
> Bio.Pathway.Rep.MultiGraph docstring test ... ok
> Bio.Phylo docstring test ... ok
> Bio.Phylo.Applications docstring test ... ok
> Bio.Phylo.Applications._Fasttree docstring test ... ok
> Bio.Phylo.Applications._Phyml docstring test ... ok
> Bio.Phylo.Applications._Raxml docstring test ... ok
> Bio.Phylo.BaseTree docstring test ... ok
> Bio.Phylo.CDAO docstring test ... ok
> Bio.Phylo.CDAOIO docstring test ... ok
> Bio.Phylo.Consensus docstring test ... ok
> Bio.Phylo.NeXML docstring test ... ok
> Bio.Phylo.NeXMLIO docstring test ... ok
> Bio.Phylo.Newick docstring test ... ok
> Bio.Phylo.NewickIO docstring test ... ok
> Bio.Phylo.NexusIO docstring test ... ok
> Bio.Phylo.PAML docstring test ... ok
> Bio.Phylo.PAML._paml docstring test ... ok
> Bio.Phylo.PAML._parse_baseml docstring test ... ok
> Bio.Phylo.PAML._parse_codeml docstring test ... ok
> Bio.Phylo.PAML._parse_yn00 docstring test ... ok
> Bio.Phylo.PAML.baseml docstring test ... ok
> Bio.Phylo.PAML.chi2 docstring test ... ok
> Bio.Phylo.PAML.codeml docstring test ... ok
> Bio.Phylo.PAML.yn00 docstring test ... ok
> Bio.Phylo.PhyloXML docstring test ... ok
> Bio.Phylo.PhyloXMLIO docstring test ... ok
> Bio.Phylo.TreeConstruction docstring test ... ok
> Bio.Phylo._cdao_owl docstring test ... ok
> Bio.Phylo._io docstring test ... ok
> Bio.Phylo._utils docstring test ... ok
> Bio.PopGen docstring test ... ok
> Bio.PopGen.GenePop docstring test ... ok
> Bio.PopGen.GenePop.Controller docstring test ... ok
> Bio.PopGen.GenePop.EasyController docstring test ... ok
> Bio.PopGen.GenePop.FileParser docstring test ... ok
> Bio.PopGen.GenePop.LargeFileParser docstring test ... ok
> Bio.Restriction docstring test ... ok
> Bio.Restriction.PrintFormat docstring test ... ok
> Bio.Restriction.Restriction docstring test ... ok
> Bio.Restriction.Restriction_Dictionary docstring test ... ok
> Bio.SCOP docstring test ... ok
> Bio.SCOP.Cla docstring test ... ok
> Bio.SCOP.Des docstring test ... ok
> Bio.SCOP.Dom docstring test ... ok
> Bio.SCOP.Hie docstring test ... ok
> Bio.SCOP.Raf docstring test ... ok
> Bio.SCOP.Residues docstring test ... ok
> Bio.SVDSuperimposer docstring test ... ok
> Bio.SearchIO docstring test ... ok
> Bio.SearchIO.BlastIO docstring test ... ok
> Bio.SearchIO.BlastIO.blast_tab docstring test ... ok
> Bio.SearchIO.BlastIO.blast_text docstring test ... ok
> Bio.SearchIO.BlastIO.blast_xml docstring test ... ok
> Bio.SearchIO.BlatIO docstring test ... ok
> Bio.SearchIO.ExonerateIO docstring test ... ok
> Bio.SearchIO.ExonerateIO._base docstring test ... ok
> Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok
> Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok
> Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok
> Bio.SearchIO.FastaIO docstring test ... ok
> Bio.SearchIO.HHsuiteIO docstring test ... ok
> Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok
> Bio.SearchIO.HmmerIO docstring test ... ok
> Bio.SearchIO.HmmerIO._base docstring test ... ok
> Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok
> Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok
> Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok
> Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok
> Bio.SearchIO.InterproscanIO docstring test ... ok
> Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok
> Bio.SearchIO._index docstring test ... ok
> Bio.SearchIO._legacy docstring test ... ok
> Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok
> Bio.SearchIO._legacy.ParserSupport docstring test ... ok
> Bio.SearchIO._model docstring test ... ok
> Bio.SearchIO._model._base docstring test ... ok
> Bio.SearchIO._model.hit docstring test ... ok
> Bio.SearchIO._model.hsp docstring test ... ok
> Bio.SearchIO._model.query docstring test ... ok
> Bio.SearchIO._utils docstring test ... ok
> Bio.Seq docstring test ... ok
> Bio.SeqFeature docstring test ... ok
> Bio.SeqIO docstring test ... ok
> Bio.SeqIO.AbiIO docstring test ... ok
> Bio.SeqIO.AceIO docstring test ... ok
> Bio.SeqIO.FastaIO docstring test ... ok
> Bio.SeqIO.GckIO docstring test ... ok
> Bio.SeqIO.IgIO docstring test ... ok
> Bio.SeqIO.InsdcIO docstring test ... ok
> Bio.SeqIO.Interfaces docstring test ... ok
> Bio.SeqIO.NibIO docstring test ... ok
> Bio.SeqIO.PdbIO docstring test ... ok
> Bio.SeqIO.PhdIO docstring test ... ok
> Bio.SeqIO.PirIO docstring test ... ok
> Bio.SeqIO.QualityIO docstring test ... ok
> Bio.SeqIO.SeqXmlIO docstring test ... ok
> Bio.SeqIO.SffIO docstring test ... ok
> Bio.SeqIO.SnapGeneIO docstring test ... ok
> Bio.SeqIO.SwissIO docstring test ... ok
> Bio.SeqIO.TabIO docstring test ... ok
> Bio.SeqIO.TwoBitIO docstring test ... ok
> Bio.SeqIO.UniprotIO docstring test ... ok
> Bio.SeqIO.XdnaIO docstring test ... ok
> Bio.SeqIO._index docstring test ... ok
> Bio.SeqIO._twoBitIO docstring test ... ok
> Bio.SeqRecord docstring test ... ok
> Bio.SeqUtils docstring test ... ok
> Bio.SeqUtils.CheckSum docstring test ... ok
> Bio.SeqUtils.CodonUsage docstring test ... ok
> Bio.SeqUtils.CodonUsageIndices docstring test ... ok
> Bio.SeqUtils.IsoelectricPoint docstring test ... ok
> Bio.SeqUtils.MeltingTemp docstring test ... ok
> Bio.SeqUtils.ProtParam docstring test ... ok
> Bio.SeqUtils.ProtParamData docstring test ... ok
> Bio.SeqUtils.lcc docstring test ... ok
> Bio.Sequencing docstring test ... ok
> Bio.Sequencing.Ace docstring test ... ok
> Bio.Sequencing.Applications docstring test ... ok
> Bio.Sequencing.Applications._Novoalign docstring test ... ok
> Bio.Sequencing.Applications._bwa docstring test ... ok
> Bio.Sequencing.Applications._samtools docstring test ... ok
> Bio.Sequencing.Phd docstring test ... ok
> Bio.SubsMat docstring test ... ok
> Bio.SubsMat.FreqTable docstring test ... ok
> Bio.SubsMat.MatrixInfo docstring test ... ok
> Bio.SwissProt docstring test ... ok
> Bio.SwissProt.KeyWList docstring test ... ok
> Bio.UniGene docstring test ... ok
> Bio.UniProt docstring test ... ok
> Bio.UniProt.GOA docstring test ... ok
> Bio.Wise docstring test ... ok
> Bio.Wise.dnal docstring test ... ok
> Bio.Wise.psw docstring test ... ok
> Bio._utils docstring test ... ok
> Bio.bgzf docstring test ... ok
> Bio.codonalign docstring test ... ok
> Bio.codonalign.chisq docstring test ... ok
> Bio.codonalign.codonalignment docstring test ... ok
> Bio.codonalign.codonseq docstring test ... ok
> Bio.cpairwise2 docstring test ... ok
> Bio.kNN docstring test ... ok
> Bio.motifs docstring test ... ok
> Bio.motifs._pwm docstring test ... ok
> Bio.motifs.alignace docstring test ... ok
> Bio.motifs.applications docstring test ... ok
> Bio.motifs.applications._xxmotif docstring test ... ok
> Bio.motifs.clusterbuster docstring test ... ok
> Bio.motifs.jaspar docstring test ... ok
> Bio.motifs.jaspar.db docstring test ... ok
> Bio.motifs.mast docstring test ... ok
> Bio.motifs.matrix docstring test ... ok
> Bio.motifs.meme docstring test ... ok
> Bio.motifs.minimal docstring test ... ok
> Bio.motifs.pfm docstring test ... ok
> Bio.motifs.thresholds docstring test ... ok
> Bio.motifs.transfac docstring test ... ok
> Bio.motifs.xms docstring test ... ok
> Bio.pairwise2 docstring test ... ok
> Bio.phenotype docstring test ... ok
> Bio.phenotype.phen_micro docstring test ... ok
> Bio.phenotype.pm_fitting docstring test ... ok
> BioSQL docstring test ... ok
> BioSQL.BioSeq docstring test ... ok
> BioSQL.BioSeqDatabase docstring test ... ok
> BioSQL.DBUtils docstring test ... ok
> BioSQL.Loader docstring test ... ok
> ======================================================================
> ERROR: test_TCoffee_clustalw (test_TCoffee_tool.TCoffeeApplication)
> Round-trip through app and read clustalw alignment from file.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Tests/test_TCoffee_tool.py",
> line 109, in test_TCoffee_clustalw
> stdout, stderr = cmdline()
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/Application/__init__.py",
> line 574, in __call__
> raise ApplicationError(return_code, str(self), stdout_str, stderr_str)
> Bio.Application.ApplicationError: Non-zero return code 11 from 't_coffee
> -output clustalw_aln -infile Fasta/fa01 -outfile Fasta/tc_out.aln -type
> protein -outorder input -gapopen -2 -gapext -5', message 'PROGRAM: T-COFFEE
> Version_13.45.0.4846264 (2020-09-21 17:25:40 - Revision 0818d8a - Build 619)'
>
> ======================================================================
> ERROR: test_TCoffee_fasta (test_TCoffee_tool.TCoffeeApplication)
> Round-trip through app and read clustal alignment from file.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Tests/test_TCoffee_tool.py",
> line 60, in test_TCoffee_fasta
> stdout, stderr = cmdline()
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/Application/__init__.py",
> line 574, in __call__
> raise ApplicationError(return_code, str(self), stdout_str, stderr_str)
> Bio.Application.ApplicationError: Non-zero return code 11 from 't_coffee
> -infile Fasta/fa01', message 'PROGRAM: T-COFFEE Version_13.45.0.4846264
> (2020-09-21 17:25:40 - Revision 0818d8a - Build 619)'
>
> ======================================================================
> ERROR: test_TCoffee_msf (test_TCoffee_tool.TCoffeeApplication)
> Round-trip through app and read GCG MSF alignment from file.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Tests/test_TCoffee_tool.py",
> line 161, in test_TCoffee_msf
> stdout, stderr = cmdline()
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/Application/__init__.py",
> line 574, in __call__
> raise ApplicationError(return_code, str(self), stdout_str, stderr_str)
> Bio.Application.ApplicationError: Non-zero return code 11 from 't_coffee
> -output msf_aln -infile Fasta/fa01 -outfile Fasta/tc_out.msf -quiet', message
> '*************************************************************************************************'
>
> ======================================================================
> ERROR: test_TCoffee_phylip (test_TCoffee_tool.TCoffeeApplication)
> Round-trip through app and read PHYLIP alignment from file.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Tests/test_TCoffee_tool.py",
> line 134, in test_TCoffee_phylip
> stdout, stderr = cmdline()
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/Application/__init__.py",
> line 574, in __call__
> raise ApplicationError(return_code, str(self), stdout_str, stderr_str)
> Bio.Application.ApplicationError: Non-zero return code 11 from 't_coffee
> -output phylip_aln -infile Fasta/fa01 -outfile Fasta/tc_out.phy -quiet',
> message
> '*************************************************************************************************'
>
> ======================================================================
> ERROR: test_TCoffee_pir (test_TCoffee_tool.TCoffeeApplication)
> Round-trip through app and read pir alignment from file.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Tests/test_TCoffee_tool.py",
> line 82, in test_TCoffee_pir
> stdout, stderr = cmdline()
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Bio/Application/__init__.py",
> line 574, in __call__
> raise ApplicationError(return_code, str(self), stdout_str, stderr_str)
> Bio.Application.ApplicationError: Non-zero return code 11 from 't_coffee
> -output pir_aln -infile Fasta/fa01 -outfile Fasta/tc_out.pir -quiet', message
> '*************************************************************************************************'
>
> ----------------------------------------------------------------------
> Ran 513 tests in 322.404 seconds
>
> FAILED (failures = 1)
> Skipping any tests requiring internet access
> Python version: 3.10.7 (main, Oct 1 2022, 04:31:04) [GCC 12.2.0]
> Operating system: posix linux
> E: pybuild pybuild:379: test: plugin custom failed with: exit code=1: set -e;
> \
> mkdir -p
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/home; \
> mkdir -p
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Doc/examples; \
> cp -a Doc/Tutorial.tex
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Doc; \
> cp -a Doc/Tutorial
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Doc; \
> cp -a Doc/examples
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Doc; \
> cp -a Tests
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build; \
> cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/Tests; \
> env DIALIGN2_DIR=/usr/share/dialign
> EMBOSS_ROOT=/usr/lib/emboss
> HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/home python3.10
> run_tests.py --offline
> rm -fr -- /tmp/dh-xdg-rundir-pKtyzKJo
> dh_auto_test: error: pybuild --test -i python{version} -p 3.10 --test
> --system=custom "--test-args=set -e; \\\
> mkdir -p {build_dir}/home; \\\
> mkdir -p {build_dir}/Doc/examples; \\\
> cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\
> cp -a Doc/Tutorial {build_dir}/Doc; \\\
> cp -a Doc/examples {build_dir}/Doc; \\\
> cp -a Tests {build_dir}; \\\
> cd {build_dir}/Tests; \\\
> env DIALIGN2_DIR=/usr/share/dialign
> EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py
> --offline" returned exit code 13
> make[1]: *** [debian/rules:84: override_dh_auto_test] Error 25
The full build log is available from:
http://qa-logs.debian.net/2022/10/23/python-biopython_1.79+dfsg-3_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20221023;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20221023&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: t-coffee
Source-Version: 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
t-coffee, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1022...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated t-coffee package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 25 Nov 2022 11:13:19 +0100
Source: t-coffee
Architecture: source
Version: 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 1022570 1023230
Changes:
t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) unstable;
urgency=medium
.
[ Étienne Mollier ]
* d/t/run-unit-test: don't meddle with user's home.
* d/rules: build with -fsigned-char.
This fixes infinite loops on CPU architectures defaulting to the char
type being unsigned, such as on arm*, ppc* and s390*. (Closes: #1023230)
* d/control: add myself to uploaders.
.
[ Andreas Tille ]
* Revert version bump to latest upstream version until
https://github.com/cbcrg/tcoffee/issues/56
is closed.
Closes: #1022570
* Keep updated patches in debian/patches dir with suffix .13.45.0.4846264
to ease upgrading to the new version once it is ready
Checksums-Sha1:
bd4854907750b6a916f71c441f49bcb0b4453b58 2391
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.dsc
fab3dbecabca6c0248a8c8a0336f5995be3b4e3f 3229824
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg.orig.tar.xz
dc1efbe2dfb5d379e2d04ce1a736f074322be181 18328
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.debian.tar.xz
3240a2a67ba1583d35377364b742b69a9e48fae0 7095
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_amd64.buildinfo
Checksums-Sha256:
943f72d4090cf2a8b88ab2a79b5aa119622201b3c7e50377cb8d92c4e72636f7 2391
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.dsc
a1b37c67caba574ccf53c38279863dffa67d62232e017317754b5eb29db60746 3229824
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg.orig.tar.xz
3e83e95b016af77d28fc7d8315979dd397f12f333bcd4a45be5f471dbd9964ed 18328
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.debian.tar.xz
fbd0d66e74c3dbe12da0daf990cd7e4b1d2692f43c1b6d32a5ee6c3daaf00ba1 7095
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_amd64.buildinfo
Files:
52f1daa016c941001a9cf2eeab00594d 2391 science optional
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.dsc
74a867b32054875c3ce5f2a11767d610 3229824 science optional
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg.orig.tar.xz
13b9ba2309fb654eeb1c4c8017c4cdb7 18328 science optional
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.debian.tar.xz
17164a40def53d3305e08a0aa5e7c548 7095 science optional
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=B15f
-----END PGP SIGNATURE-----
--- End Message ---
