Your message dated Sat, 03 Dec 2022 20:45:16 +0000
with message-id <[email protected]>
and subject line Bug#1018377: fixed in insilicoseq 1.5.4-3
has caused the Debian Bug report #1018377,
regarding insilicoseq: build-depends on python3-nose or uses it for autopkgtest
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1018377: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1018377
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: insilicoseq
Version: 1.5.4-2
User: [email protected]
Usertags: nose-rm
Dear Maintainer,
Your package still uses nose [1], which is an obsolete testing framework for
Python, dead and unmaintained since 2015 [2][3].
If you received this bug report, it means that your package either has a
build-dependency on python3-nose or uses that package in debian/tests/control.
If that is not the case, please reply and CC me explicitly.
Please port your package to one of the alternatives: nose2 [4], pytest [5]
or unittest from Python standard library [6].
There is a script called nose2pytest [7] which can assist with migrating from
nose to pytest.
This mass bug filing was discussed on debian-devel in [8].
[1]: https://tracker.debian.org/pkg/nose
[2]: https://github.com/nose-devs/nose/commit/0f40fa995384afad
[3]: https://pypi.org/project/nose/#history
[4]: https://docs.nose2.io/en/latest/
[5]: https://docs.pytest.org/en/latest/
[6]: https://docs.python.org/3/library/unittest.html
[7]: https://github.com/pytest-dev/nose2pytest
[8]: https://lists.debian.org/debian-devel/2022/08/msg00184.html
--
Dmitry Shachnev
--- End Message ---
--- Begin Message ---
Source: insilicoseq
Source-Version: 1.5.4-3
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
insilicoseq, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated insilicoseq package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 03 Dec 2022 20:42:32 +0100
Source: insilicoseq
Architecture: source
Version: 1.5.4-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1018377
Changes:
insilicoseq (1.5.4-3) unstable; urgency=medium
.
* d/{,t/}control: depend on pytest instead of nose
* d/patches:
- add patch to support pytest (Closes: #1018377)
- skip test_ncbi test which requires network access
* d/t/: run tests against all support py3 versions
* routine-update: Standards-Version: 4.6.1
* d/{control,rules}: implement nocheck build profile
* d/pybuild.testfiles: Install tests
* d/rules:
- fix permission for read_only.fasta during tests
- add override to remove __pycache__ from examples dir
.
[ Étienne Mollier ]
* d/t/control: tests depend on python3-all.
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