Your message dated Fri, 09 Dec 2022 21:38:57 +0000 with message-id <[email protected]> and subject line Bug#994459: fixed in q2templates 2022.8.0+ds-2 has caused the Debian Bug report #994459, regarding libjs-jquery removed symlinked files to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 994459: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994459 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: q2templates Version: 2020.11.1+dfsg-1 Severity: normal Running qiime like this produces an error: | $ qiime demux summarize --i-data test.qza --o-visualization test.qzv | /usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:36: UserWarning: h5py is running against HDF5 1.10.7 when it was built against 1.10.6, this may cause problems | _warn(("h5py is running against HDF5 {0} when it was built against {1}, " | /usr/lib/python3/dist-packages/skbio/util/_testing.py:15: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead. | import pandas.util.testing as pdt | Plugin error from demux: | | [('/usr/lib/python3/dist-packages/q2templates/templates/assets/js/jquery.min.js', '/tmp/qiime2-temp-worx3rub/q2templateassets/js/jquery.min.js', "[Errno 2] No such file or directory: '/usr/lib/python3/dist-packages/q2templates/templates/assets/js/jquery.min.js'")] The critical part is the absence of /usr/lib/python3/dist-packages/q2templates/templates/assets/js/jquery.min.js, which is a broken symlink. My `apt-file find` opined that libjs-jquery would have that file, but since 3.5.1+dfsg+~3.5.5-4 these are not present any more. As it's probably too late for node-jquery to Breaks: q2templates (or should it still, for the next release?), the best fix to me seems to bend the link over to the un-minified version; this is what fixed the issue for me locally. -- System Information: Debian Release: bookworm/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.13.0 (SMP w/8 CPU threads) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8), LANGUAGE=en_GB:en Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages q2templates depends on: ii libjs-bootstrap 3.4.1+dfsg-2 ii libjs-jquery 3.5.1+dfsg+~3.5.5-7 ii node-normalize.css 8.0.1-4 ii python3 3.9.4-1 ii python3-jinja2 2.11.3-1 ii python3-pandas 1.1.5+dfsg-2 ii python3-setuptools 52.0.0-4 q2templates recommends no packages. q2templates suggests no packages. -- no debconf information -- To use raw power is to make yourself infinitely vulnerable to greater powers. -- Bene Gesserit axiom
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--- Begin Message ---Source: q2templates Source-Version: 2022.8.0+ds-2 Done: Andreas Tille <[email protected]> We believe that the bug you reported is fixed in the latest version of q2templates, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated q2templates package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 09 Dec 2022 21:43:27 +0100 Source: q2templates Architecture: source Version: 2022.8.0+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Closes: 994459 1024821 Changes: q2templates (2022.8.0+ds-2) unstable; urgency=medium . * Team upload. * Fix autopkgtest with pandas 1.5 Closes: #1024821 * Verify link to jquery.min.js Closes: #994459 Checksums-Sha1: 03b0dd44ad85cb4075993cf92a36824d128c3c2b 2227 q2templates_2022.8.0+ds-2.dsc 6bef0fcd1b072ec3b4696bc11c4705b7f92884e6 6748 q2templates_2022.8.0+ds-2.debian.tar.xz 17c2fff2e2e72a8a883040afd0938d0fe21ad1c2 7272 q2templates_2022.8.0+ds-2_amd64.buildinfo Checksums-Sha256: 521132d1c6ebf6bd645443243febf7c6a3393fc348648fbc2ea538289148d100 2227 q2templates_2022.8.0+ds-2.dsc d8e0202eb997dd63ded80b3682d7f5429a36b4742d7354b05b4738566fbabf2e 6748 q2templates_2022.8.0+ds-2.debian.tar.xz 0ae80c1f90f8de521c1368b60899b670a39956f08ba00d8667ae3b4f314910bc 7272 q2templates_2022.8.0+ds-2_amd64.buildinfo Files: 2c8763ed91f05e88ed3ce5c12a9834bd 2227 science optional q2templates_2022.8.0+ds-2.dsc 33b9327f8601c48be77d64a5bc315a7b 6748 science optional q2templates_2022.8.0+ds-2.debian.tar.xz 878a62c24afe02a7bba8ea147585728c 7272 science optional q2templates_2022.8.0+ds-2_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOTn5ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEkIA//RwcFa2dQOonLiJFzIUiDYvq/F5mb4ycq 1mJyMyStF05pPG26IbuGaefArl0znde3hL5HQUMGlFs8bcQriHdXucwXeOvCsdOL aZPUUQbBfHYSweZafPutFILlRYOGIOP52q8OWSrdVBpI+JdhfPpF1j1jqxwL9O4l UWHQGZZ9E7aPxB0Rx145m8wrko/bl5pmt9fRu6+g16UKURsjfLivVmbrKSKf0s+C 7S5PTeKRahI4e8Lsm6q1Tn76tpUA+csfHPPINKHWZkUJjcHPSn/ySnVzcyuyg50m wAiiddSMo3JxhKICXbm2UeGyM5mmCn2N9tm2aNF1SrWWWAwA5cmDeKpdVATAx01R tM+6hCBNx56GGOBPFFjIR0g4M5JG5YdWcjIMsS0JytPqVFicOZd3yqLgZwpfDjwf XzI9/o661QDuSm5D4ys9wdX5UOMV0YHWFcpGrs0LFVDTB97GdNCIhqDzEDpjxb2O rTHVIqH9iJMe04CQq49ggTGVPp9PkGOHZU91+IYxP871ybHtsJwWl85X/thJHq9e OI/4hBVQnsA1CUGH731F5mgvBGne1xHqUkJflm/LQYgtcTK/2s+Q6VtVmDBKYtlr LkCCNVq5xWaldLiFSwGZw9JTa7v9xBfVSBFzOn5XLT+uvqlzbIxPasp5P94RB7um NFJsBwR1fAo= =Stwk -----END PGP SIGNATURE-----
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