Your message dated Thu, 13 Apr 2023 13:19:05 +0000
with message-id <[email protected]>
and subject line Bug#1034349: fixed in bedtools 2.30.0+dfsg-3
has caused the Debian Bug report #1034349,
regarding bedtools: autopkgtest fails on bookworm kernel: ulimit: error setting
limit (Operation not permitted)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1034349: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1034349
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: bedtools
Version: 2.30.0+dfsg-2
Severity: serious
Control: tags -1 bookworm-ignore
User: [email protected]
Usertags: regression
Dear maintainer(s),
Your package has an autopkgtest, great. However, it fails when the host
is running a bookworm kernel. I have upgrade several of the
ci.debian.net hosts (arm64, i386, ppc64el and s390x) to bookworm and
that's where the failure happens. I confirm that running the test on
amd64 with a bookworm kernel fails in the same way. Can you please
investigate the situation and fix it? I copied some of the output at the
bottom of this report.
The release team has announced [1] that failing autopkgtest on amd64 and
arm64 are considered RC in testing. [Release Team member hat on] Because
we're currently in the hard freeze for bookworm, I have marked this bug
as bookworm-ignore. Targeted fixes are still welcome.
More information about this bug and the reason for filing it can be
found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://lists.debian.org/debian-devel-announce/2019/07/msg00002.html
https://ci.debian.net/data/autopkgtest/testing/arm64/b/bedtools/32856831/log.gz
autopkgtest [18:36:06]: test run-unit-test: [-----------------------
test.sh: 4: ulimit: error setting limit (Operation not permitted)
autopkgtest [18:36:07]: test run-unit-test: -----------------------]
OpenPGP_signature
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--- End Message ---
--- Begin Message ---
Source: bedtools
Source-Version: 2.30.0+dfsg-3
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
bedtools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated bedtools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 13 Apr 2023 14:12:15 +0200
Source: bedtools
Architecture: source
Version: 2.30.0+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1034349
Changes:
bedtools (2.30.0+dfsg-3) unstable; urgency=medium
.
* Do not use ulimit in test
Closes: #1034349
* Override false positive (see lintian bug #1017966)
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