Your message dated Tue, 20 Jun 2023 15:55:08 +0000
with message-id <[email protected]>
and subject line Bug#1037777: fixed in minexpert2 9.2.0-1
has caused the Debian Bug report #1037777,
regarding minexpert2: ftbfs with GCC-13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1037777: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037777
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:minexpert2
Version: 8.6.3-1
Severity: normal
Tags: sid trixie
User: [email protected]
Usertags: ftbfs-gcc-13
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-13/g++-13, but succeeds to build with gcc-12/g++-12. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2023/05/22/logs/minexpert2_8.6.3-1_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 13, either set CC=gcc-13 CXX=g++-13 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-13/porting_to.html
[...]
[ 3%] Generating ui_AboutDlg.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_AboutDlg.h
/<<PKGBUILDDIR>>/src/gui/ui/AboutDlg.ui
[ 4%] Generating ui_AnalysisPreferencesDlg.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_AnalysisPreferencesDlg.h
/<<PKGBUILDDIR>>/src/gui/ui/AnalysisPreferencesDlg.ui
[ 5%] Generating ui_BasePlotCompositeWidget.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_BasePlotCompositeWidget.h
/<<PKGBUILDDIR>>/src/gui/ui/BasePlotCompositeWidget.ui
[ 6%] Generating ui_BasePlotWnd.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_BasePlotWnd.h
/<<PKGBUILDDIR>>/src/gui/ui/BasePlotWnd.ui
[ 7%] Generating ui_ConsoleWnd.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_ConsoleWnd.h
/<<PKGBUILDDIR>>/src/gui/ui/ConsoleWnd.ui
[ 8%] Generating ui_ElementGroupBoxWidget.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_ElementGroupBoxWidget.h
/<<PKGBUILDDIR>>/src/gui/ui/ElementGroupBoxWidget.ui
[ 9%] Generating ui_IsoSpecDlg.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_IsoSpecDlg.h
/<<PKGBUILDDIR>>/src/gui/ui/IsoSpecDlg.ui
[ 10%] Generating ui_MassPeakShaperDlg.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_MassPeakShaperDlg.h
/<<PKGBUILDDIR>>/src/gui/ui/MassPeakShaperDlg.ui
[ 11%] Generating ui_MsFragmentationSpecDlg.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_MsFragmentationSpecDlg.h
/<<PKGBUILDDIR>>/src/gui/ui/MsFragmentationSpecDlg.ui
[ 12%] Generating ui_MsRunDataSetTableViewWnd.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_MsRunDataSetTableViewWnd.h
/<<PKGBUILDDIR>>/src/gui/ui/MsRunDataSetTableViewWnd.ui
/<<PKGBUILDDIR>>/src/gui/ui/MsRunDataSetTableViewWnd.ui: Warning: The name
'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'.
[ 13%] Generating ui_MsRunSelectorDlg.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_MsRunSelectorDlg.h
/<<PKGBUILDDIR>>/src/gui/ui/MsRunSelectorDlg.ui
[ 14%] Generating ui_MzIntegrationParamsDlg.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_MzIntegrationParamsDlg.h
/<<PKGBUILDDIR>>/src/gui/ui/MzIntegrationParamsDlg.ui
[ 15%] Generating ui_OpenMsRunDataSetsDlg.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_OpenMsRunDataSetsDlg.h
/<<PKGBUILDDIR>>/src/gui/ui/OpenMsRunDataSetsDlg.ui
[ 16%] Generating ui_ProcessingFlowViewerDlg.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_ProcessingFlowViewerDlg.h
/<<PKGBUILDDIR>>/src/gui/ui/ProcessingFlowViewerDlg.ui
[ 17%] Generating ui_SaveToGraphicsFileDlg.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_SaveToGraphicsFileDlg.h
/<<PKGBUILDDIR>>/src/gui/ui/SaveToGraphicsFileDlg.ui
[ 17%] Generating ui_SavitzkyGolayFilterParamsDlg.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_SavitzkyGolayFilterParamsDlg.h
/<<PKGBUILDDIR>>/src/gui/ui/SavitzkyGolayFilterParamsDlg.ui
[ 18%] Generating ui_TaskMonitorCompositeWidget.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_TaskMonitorCompositeWidget.h
/<<PKGBUILDDIR>>/src/gui/ui/TaskMonitorCompositeWidget.ui
[ 19%] Generating ui_TaskMonitorWnd.h
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/lib/qt6/libexec/uic -o
/<<PKGBUILDDIR>>/debian/build/src/ui_TaskMonitorWnd.h
/<<PKGBUILDDIR>>/src/gui/ui/TaskMonitorWnd.ui
cd /<<PKGBUILDDIR>>/debian/build && /usr/bin/cmake -E cmake_depends "Unix
Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/debian/build
/<<PKGBUILDDIR>>/debian/build/src
/<<PKGBUILDDIR>>/debian/build/src/CMakeFiles/minexpert2.dir/DependInfo.cmake
--color=
make[4]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make -f src/CMakeFiles/minexpert2.dir/build.make
src/CMakeFiles/minexpert2.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/debian/build'
[ 20%] Building CXX object
src/CMakeFiles/minexpert2.dir/minexpert2_autogen/mocs_compilation.cpp.o
cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DQT_CORE5COMPAT_LIB
-DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_DEBUG_OUTPUT
-DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB
-I/<<PKGBUILDDIR>>/debian/build/src -I/<<PKGBUILDDIR>>/src
-I/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/include
-I/<<PKGBUILDDIR>>/debian/build -I/<<PKGBUILDDIR>> -isystem
/usr/include/x86_64-linux-gnu/qt6/QtWidgets -isystem
/usr/include/x86_64-linux-gnu/qt6 -isystem
/usr/include/x86_64-linux-gnu/qt6/QtCore -isystem
/usr/lib/x86_64-linux-gnu/qt6/mkspecs/linux-g++ -isystem
/usr/include/x86_64-linux-gnu/qt6/QtGui -isystem
/usr/include/x86_64-linux-gnu/qt6/QtXml -isystem
/usr/include/x86_64-linux-gnu/qt6/QtSvg -isystem
/usr/include/x86_64-linux-gnu/qt6/QtPrintSupport -isystem
/usr/include/IsoSpec++ -isystem /usr/include/pappsomspp -isystem
/usr/include/QuaZip-Qt6-1.4 -isystem /usr/include/QuaZip-Qt6-1.4/quazip
-isystem /usr/include/x86_64-linux-gnu/qt6/QtCore5Compat -g -O2 -ffile
-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -fopenmp -O3 -DNDEBUG -Wno-unknown-pragmas -Wall
-pedantic -Wextra -Werror -fPIC -std=gnu++17 -MD -MT
src/CMakeFiles/minexpert2.dir/minexpert2_autogen/mocs_compilation.cpp.o -MF
CMakeFiles/minexpert2.dir/minexpert2_autogen/mocs_compilation.cpp.o.d -o
CMakeFiles/minexpert2.dir/minexpert2_autogen/mocs_compilation.cpp.o -c
/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/mocs_compilation.cpp
In file included from
/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/DMHXEJ42XS/../../../../../src/gui/../nongui/Atom.hpp:44,
from
/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/DMHXEJ42XS/../../../../../src/gui/IsoSpecDlg.hpp:48,
from
/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/DMHXEJ42XS/moc_IsoSpecDlg.cpp:10,
from
/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/mocs_compilation.cpp:17:
/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/DMHXEJ42XS/../../../../../src/gui/../nongui/Ponderable.hpp:81:23:
error: ‘virtual msxps::minexpert::Ponderable&
msxps::minexpert::Ponderable::operator=(const msxps::minexpert::Ponderable&)’
was hidden [-Werror=overloaded-virtual=]
81 | virtual Ponderable &operator=(const Ponderable &);
| ^~~~~~~~
/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/DMHXEJ42XS/../../../../../src/gui/../nongui/Atom.hpp:112:17:
note: by ‘virtual msxps::minexpert::Atom&
msxps::minexpert::Atom::operator=(const msxps::minexpert::Atom&)’
112 | virtual Atom &operator=(const Atom &);
| ^~~~~~~~
/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/DMHXEJ42XS/../../../../../src/gui/../nongui/Atom.hpp:112:17:
error: ‘virtual msxps::minexpert::Atom&
msxps::minexpert::Atom::operator=(const msxps::minexpert::Atom&)’ was hidden
[-Werror=overloaded-virtual=]
In file included from
/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/DMHXEJ42XS/../../../../../src/gui/../nongui/Formula.hpp:42,
from
/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/DMHXEJ42XS/../../../../../src/gui/IsoSpecDlg.hpp:49:
/<<PKGBUILDDIR>>/debian/build/src/minexpert2_autogen/DMHXEJ42XS/../../../../../src/gui/../nongui/AtomCount.hpp:78:14:
note: by ‘msxps::minexpert::AtomCount&
msxps::minexpert::AtomCount::operator=(const msxps::minexpert::AtomCount&)’
78 | AtomCount &operator=(const AtomCount &);
| ^~~~~~~~
cc1plus: all warnings being treated as errors
make[4]: *** [src/CMakeFiles/minexpert2.dir/build.make:231:
src/CMakeFiles/minexpert2.dir/minexpert2_autogen/mocs_compilation.cpp.o] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make[3]: *** [CMakeFiles/Makefile2:135: src/CMakeFiles/minexpert2.dir/all]
Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make[2]: *** [Makefile:139: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make[1]: *** [debian/rules:40: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:17: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: minexpert2
Source-Version: 9.2.0-1
Done: Filippo Rusconi <[email protected]>
We believe that the bug you reported is fixed in the latest version of
minexpert2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Filippo Rusconi <[email protected]> (supplier of updated minexpert2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 20 Jun 2023 16:56:43 +0200
Source: minexpert2
Architecture: source
Version: 9.2.0-1
Distribution: unstable
Urgency: low
Maintainer: The Debichem Group <[email protected]>
Changed-By: Filippo Rusconi <[email protected]>
Closes: 1037777
Changes:
minexpert2 (9.2.0-1) unstable; urgency=low
.
* New upstream release with improvements in the way plots are exported
as graphics files or as a clipboard object (SVG or RASTER).
.
* Update dep lib version libpappsomspp-dev (>= 0.9.12).
.
* Removed a bunch of dep pacakges versions.
.
* Standards-Version: 4.6.2
.
* Remove Conflicts: msxpertsuite-minexpert-data-doc and co.
.
* Should fix the build failure (Closes: #1037777).
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Files:
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--- End Message ---
