Your message dated Sun, 13 Aug 2023 10:49:57 +0000
with message-id <[email protected]>
and subject line Bug#1037718: fixed in libbpp-phyl 2.4.1-9
has caused the Debian Bug report #1037718,
regarding libbpp-phyl: ftbfs with GCC-13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1037718: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037718
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:libbpp-phyl
Version: 2.4.1-8
Severity: normal
Tags: sid trixie
User: [email protected]
Usertags: ftbfs-gcc-13
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-13/g++-13, but succeeds to build with gcc-12/g++-12. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2023/05/22/logs/libbpp-phyl_2.4.1-8_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 13, either set CC=gcc-13 CXX=g++-13 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-13/porting_to.html
[...]
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessImESaIS8_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessImESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmPN3bpp4NodeEESt10_Select1stIS5_ESt4lessImESaIS5_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESG_IJEEEEESt17_Rb_tree_iteratorIS5_ESt23_Rb_tree_const_iteratorIS5_EDpOT_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmPN3bpp4NodeEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmPN3bpp4NodeEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmSt3mapImSt6vectorImSaImEESt4lessImESaIS0_IS1_S5_EEEESt10_Select1stISB_ES7_SaISB_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmSt3mapImSt6vectorImSaImEESt4lessImESaIS0_IS1_S5_EEEESt10_Select1stISB_ES7_SaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIiSaIiEEESt10_Select1stIS5_ESt4lessImESaIS5_EE20_Reuse_or_alloc_nodeclIRKS5_EEPSt13_Rb_tree_nodeIS5_EOT_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIiSaIiEEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIiSaIiEEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorImSaImEEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorImSaImEEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmiESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmiESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
2.4.1
_ZNSt8_Rb_treeImmSt9_IdentityImESt4lessImESaImEE16_M_insert_uniqueImEESt4pairISt17_Rb_tree_iteratorImEbEOT_@Base
2.4.1
_ZSt10scientificRSt8ios_base@Base 2.4.1
_ZSt11__remove_ifIN9__gnu_cxx17__normal_iteratorIPcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEENS0_5__ops16_Iter_equals_valIKcEEET_SE_SE_T0_@Base
2.4.1
@@ -4894,17 +4973,20 @@
_ZSt16__do_uninit_copyIPKN3bpp22AbstractTreeLikelihood36ConstNoPartitionSiteModelDescriptionEPS2_ET0_T_S7_S6_@Base
2.4.1
_ZSt16__do_uninit_copyIPKN3bpp7SimplexEPS1_ET0_T_S6_S5_@Base 2.4.1
_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIP12StringAndIntSt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_less_iterEEvT_SA_T0_@Base
2.4.1
+ _ZSt18__do_uninit_fill_nIPN3bpp18UserAlphabetIndex1EmS1_ET_S3_T0_RKT1_@Base
2.4.1-8
_ZSt18__do_uninit_fill_nIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmS5_ET_S7_T0_RKT1_@Base
2.4.1
- _ZSt19piecewise_construct@Base 2.4.1
+#MISSING: 2.4.1-8# _ZSt19piecewise_construct@Base 2.4.1
_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP12StringAndIntSt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base
2.4.1
_ZSt4swapI12StringAndIntENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS5_ESt18is_move_assignableIS5_EEE5valueEvE4typeERS5_SF_@Base
2.4.1
_ZSt5fixedRSt8ios_base@Base 2.4.1
+
_ZSteqIcSt11char_traitsIcESaIcEEbRKNSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_@Base
2.4.1-8
+
_ZSteqIcSt11char_traitsIcESaIcEEbRKNSt7__cxx1112basic_stringIT_T0_T1_EESA_@Base
2.4.1-8
_ZStmiRKSt15_Deque_iteratorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERS5_PS5_ESA_@Base
2.4.1
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_@Base
2.4.1
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_OS8_@Base
2.4.1
-
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_@Base
2.4.1
-
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EERKS8_PKS5_@Base
2.4.1
-
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EERKS8_SA_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EERKS8_PKS5_@Base
2.4.1
+#MISSING: 2.4.1-8#
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EERKS8_SA_@Base
2.4.1
_ZTIN3bpp10BppBooleanE@Base 2.4.1
_ZTIN3bpp10BppNumberIE@Base 2.4.1
_ZTIN3bpp10ConstraintE@Base 2.4.1
@@ -8249,6 +8331,7 @@
_ZTv0_n24_N3bpp26RHomogeneousTreeLikelihoodD0Ev@Base 2.4.1
_ZTv0_n24_N3bpp26RHomogeneousTreeLikelihoodD1Ev@Base 2.4.1
_ZTv0_n24_N3bpp26SimpleDiscreteDistributionD0Ev@Base 2.4.1
+ _ZTv0_n24_N3bpp26SimpleDiscreteDistributionD1Ev@Base 2.4.1-8
_ZTv0_n24_N3bpp27BppOSubstitutionModelFormatD0Ev@Base 2.4.1
_ZTv0_n24_N3bpp27BppOSubstitutionModelFormatD1Ev@Base 2.4.1
_ZTv0_n24_N3bpp27CodonAdHocSubstitutionModelD0Ev@Base 2.4.1
@@ -9413,6 +9496,6 @@
_ZTv0_n96_NK3bpp24DRASDRTreeLikelihoodData24getNumberOfDistinctSitesEv@Base
2.4.1
_ZTv0_n96_NK3bpp26TreeDrawingListenerAdapter12isAutonomousEv@Base 2.4.1
_ZTv0_n96_NK3bpp28NNIHomogeneousTreeLikelihood16getTopologyValueEv@Base 2.4.1
- _ZZNSt8__detail18__to_chars_10_implImEEvPcjT_E8__digits@Base 2.4.1
+#MISSING: 2.4.1-8#
_ZZNSt8__detail18__to_chars_10_implImEEvPcjT_E8__digits@Base 2.4.1
_Zlt12StringAndIntS_@Base 2.4.1
_Zlt9IntAndIntS_@Base 2.4.1
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:10: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: libbpp-phyl
Source-Version: 2.4.1-9
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libbpp-phyl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated libbpp-phyl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 13 Aug 2023 12:13:20 +0200
Source: libbpp-phyl
Architecture: source
Version: 2.4.1-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1037718
Changes:
libbpp-phyl (2.4.1-9) unstable; urgency=medium
.
* Team upload.
* d/*.symbols*: mark some gcc specific symbols as optional. (Closes:
#1037718)
* Standards-Version: 4.6.2 (routine-update)
Checksums-Sha1:
83809fff12d2eb0d28f77bb202704918470d7d30 2258 libbpp-phyl_2.4.1-9.dsc
1f56c98d8bc3e8c8b9a9a8ec8e1d1795cbb1482e 58372
libbpp-phyl_2.4.1-9.debian.tar.xz
Checksums-Sha256:
57e1286e8f2d40e2e88c3912a3bad907db7ae25a2ced4ea8780a5e88c3e0bac8 2258
libbpp-phyl_2.4.1-9.dsc
d5354bbb329c35ba2bc01dd0cb9f5239753a3deb49b19228421b7b1e87698437 58372
libbpp-phyl_2.4.1-9.debian.tar.xz
Files:
e3da20488a950241338aad6cc7d91aae 2258 science optional libbpp-phyl_2.4.1-9.dsc
eb204afebb3436723b1f3fd7a1e854e6 58372 science optional
libbpp-phyl_2.4.1-9.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=VUUu
-----END PGP SIGNATURE-----
--- End Message ---