Your message dated Mon, 14 Aug 2023 15:04:41 +0000
with message-id <[email protected]>
and subject line Bug#1037742: fixed in libssw 1.2.5-1
has caused the Debian Bug report #1037742,
regarding libssw: FTBFS: dpkg-gensymbols: error: some symbols or patterns
disappeared in the symbols file: see diff output below
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1037742: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037742
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: libssw
Version: 1.1-13
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-20230726 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> LD_LIBRARY_PATH=`pwd`/src help2man --version-string=' ' --help-option=' ' \
> -I debian/extra-man-info.txt \
> -N -n 'fast Smith-Waterman aligner' \
> --no-discard-stderr src/ssw-align \
> | fgrep -v ERROR > debian/ssw-align.1
> dh_installman
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_perl
> dh_link
> jh_installlibs
> jh_classpath
> jh_manifest
> jh_exec
> jh_depends
> mh_installpoms
> mh_linkjars --skip-clean-poms
> dh_strip_nondeterminism
> dh_compress
> dh_fixperms
> dh_missing
> dh_dwz -a
> dh_strip -a
> dh_makeshlibs -a
> dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols
> file: see diff output below
> dpkg-gensymbols: warning: debian/libssw0/DEBIAN/symbols doesn't match
> completely debian/libssw0.symbols
> --- debian/libssw0.symbols (libssw0_1.1-13_amd64)
> +++ dpkg-gensymbolsLQ_iNr 2023-07-26 19:14:10.300342095 +0000
> @@ -22,9 +22,9 @@
>
> _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentE@Base
> 1.1
>
> _ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentE@Base
> 1.1
>
> (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base
> 1.1
> - _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev@Base 1.1
> - _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev@Base 1.1
> - _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev@Base 1.1
> +#MISSING: 1.1-13#
> _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev@Base 1.1
> +#MISSING: 1.1-13#
> _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev@Base 1.1
> +#MISSING: 1.1-13#
> _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev@Base 1.1
> align_destroy@Base 1.1
> init_destroy@Base 1.1
> mark_mismatch@Base 1.1
> dh_makeshlibs: error: failing due to earlier errors
> make: *** [debian/rules:20: binary] Error 25
The full build log is available from:
http://qa-logs.debian.net/2023/07/26/libssw_1.1-13_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230726;[email protected]
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230726&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: libssw
Source-Version: 1.2.5-1
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libssw, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated libssw package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 15 Jul 2023 12:56:57 +0200
Source: libssw
Architecture: source
Version: 1.2.5-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1037742
Changes:
libssw (1.2.5-1) experimental; urgency=medium
.
[ Andreas Tille ]
* Team upload.
* New upstream version.
* Remove trailing whitespace in debian/copyright (routine-update)
* Update symbols for gcc-13
Closes: #1037742
.
[ Michael R. Crusoe ]
* Remove extra copy of SIMDe in debian/include/simde
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--- End Message ---
