Your message dated Wed, 15 Nov 2023 10:49:01 +0000
with message-id <[email protected]>
and subject line Bug#1043943: fixed in aegean 0.16.0+dfsg-3
has caused the Debian Bug report #1043943,
regarding aegean: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1043943: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1043943
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: aegean
Version: 0.16.0+dfsg-2
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> -------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package aegean
> dpkg-buildpackage: info: source version 0.16.0+dfsg-2
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Sascha Steinbiss <[email protected]>
> dpkg-source --before-build .
> fakeroot debian/rules clean
> dh clean
> dh_auto_clean
> make -j8 clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> rm -rf bin/parseval bin/canon-gff3 bin/locuspocus bin/gaeval bin/xtractore
> bin/pmrna bin/tidygff3 bin/unittests libaegean.a
> obj/AgnAttributeFilterStream.o obj/AgnCliquePair.o obj/AgnCompareReportHTML.o
> obj/AgnCompareReportText.o obj/AgnComparison.o obj/AgnFilterStream.o
> obj/AgnGaevalVisitor.o obj/AgnGeneStream.o obj/AgnInferCDSVisitor.o
> obj/AgnInferExonsVisitor.o obj/AgnInferParentStream.o obj/AgnLocus.o
> obj/AgnLocusFilterStream.o obj/AgnLocusMapVisitor.o
> obj/AgnLocusRefineStream.o obj/AgnLocusStream.o obj/AgnMrnaRepVisitor.o
> obj/AgnPseudogeneFixVisitor.o obj/AgnRemoveChildrenVisitor.o
> obj/AgnTranscriptClique.o obj/AgnTypecheck.o obj/AgnUnitTest.o obj/AgnUtils.o
> inc/core/AgnVersion.h bin/*.dSYM
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_clean
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building aegean using existing
> ./aegean_0.16.0+dfsg.orig.tar.xz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: info: local changes detected, the modified files are:
> aegean-0.16.0+dfsg/README
> dpkg-source: error: aborting due to unexpected upstream changes, see
> /tmp/aegean_0.16.0+dfsg-2.diff.KxtQbl
> dpkg-source: info: Hint: make sure the version in debian/changelog matches
> the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source
> --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/aegean_0.16.0+dfsg-2_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: aegean
Source-Version: 0.16.0+dfsg-3
Done: Sascha Steinbiss <[email protected]>
We believe that the bug you reported is fixed in the latest version of
aegean, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <[email protected]> (supplier of updated aegean package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 15 Nov 2023 11:32:13 +0100
Source: aegean
Architecture: source
Version: 0.16.0+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Sascha Steinbiss <[email protected]>
Closes: 1043943
Changes:
aegean (0.16.0+dfsg-3) unstable; urgency=medium
.
* Ensure multiple builds can be done in same directory.
Done by ensuring the directory is cleaned correctly.
Closes: #1043943
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