Your message dated Sat, 02 Dec 2023 22:49:26 +0000
with message-id <[email protected]>
and subject line Bug#1049745: fixed in beast2-mcmc 2.7.6+dfsg-1
has caused the Debian Bug report #1049745,
regarding beast2-mcmc: Fails to build binary packages again after successful
build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1049745: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1049745
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: beast2-mcmc
Version: 2.7.5+dfsg-1
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to do build a binary-only build (not source) after a
successful build (dpkg-buildpackage ; dpkg-buildpackage -b).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -b
> ----------------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package beast2-mcmc
> dpkg-buildpackage: info: source version 2.7.5+dfsg-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]>
> dpkg-source --before-build .
> dpkg-buildpackage: info: host architecture amd64
> debian/rules clean
> dh clean --with javahelper
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> # skip as it needs patches applied, only remove our files generated manually
> # with antlr4.
> if [ -e debian/treeparser ]; then \
> rm src/beast/base/evolution/tree/treeparser/*.java; \
> mv debian/treeparser/*.java src/beast/base/evolution/tree/treeparser; \
> fi
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> jh_clean
> dh_clean
> debian/rules binary
> dh binary --with javahelper
> dh_update_autotools_config
> dh_autoreconf
> debian/rules execute_before_dh_auto_configure
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> # Replacing upstream .java files generated by a recent antlr4 with ones
> # generated on-the-fly with Debian-packaged antlr4.
> mkdir debian/treeparser
> mkdir: cannot create directory âdebian/treeparserâ: File exists
> make[1]: *** [debian/rules:44: execute_before_dh_auto_configure] Error 1
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> make: *** [debian/rules:24: binary] Error 2
> dpkg-buildpackage: error: debian/rules binary subprocess returned exit status
> 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -b' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/16/beast2-mcmc_2.7.5+dfsg-1_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: beast2-mcmc
Source-Version: 2.7.6+dfsg-1
Done: Pierre Gruet <[email protected]>
We believe that the bug you reported is fixed in the latest version of
beast2-mcmc, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pierre Gruet <[email protected]> (supplier of updated beast2-mcmc package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 02 Dec 2023 23:33:10 +0100
Source: beast2-mcmc
Architecture: source
Version: 2.7.6+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Pierre Gruet <[email protected]>
Closes: 1043696 1049745
Changes:
beast2-mcmc (2.7.6+dfsg-1) unstable; urgency=medium
.
* Fixing the clean target (Closes: #1043696, #1049745)
.
[ Andreas Tille ]
* New upstream version
* Remove trailing whitespace in debian/rules (routine-update)
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