Your message dated Tue, 06 Feb 2024 10:34:24 +0000
with message-id <[email protected]>
and subject line Bug#1043666: fixed in biosig 2.5.2-2
has caused the Debian Bug report #1043666,
regarding biosig: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1043666: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1043666
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: biosig
Version: 2.5.0-1
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> -------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package biosig
> dpkg-buildpackage: info: source version 2.5.0-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]>
> dpkg-source --before-build .
> debian/rules clean
> dh clean --with python3,numpy3,octave
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> if [ -f biosig4c++/python//setup.py ] ; then pybuild --clean ; fi
> I: pybuild base:275: python3.11 setup.py clean
> /<<PKGBUILDDIR>>/biosig4c++/python/setup.py:35: DeprecationWarning:
>
> `numpy.distutils` is deprecated since NumPy 1.23.0, as a result
> of the deprecation of `distutils` itself. It will be removed for
> Python >= 3.12. For older Python versions it will remain present.
> It is recommended to use `setuptools < 60.0` for those Python versions.
> For more details, see:
> https://numpy.org/devdocs/reference/distutils_status_migration.html
>
>
> import numpy.distutils.misc_util
> running clean
> removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_biosig/build' (and
> everything under it)
> 'build/bdist.linux-x86_64' does not exist -- can't clean it
> 'build/scripts-3.11' does not exist -- can't clean it
> dh_auto_clean
> make -j8 distclean
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> make -C biosig4c++/mma clean
> make[3]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/mma'
> ls: cannot access '/SystemFiles/Links/MathLink/DeveloperKit/*': No such file
> or directory
> mliver.c:5:10: fatal error: mathlink.h: No such file or directory
> 5 | #include <mathlink.h>
> | ^~~~~~~~~~~~
> compilation terminated.
> rm -f *.o* */*.o*
> rm -f *tm.c */*tm.c
> rm -f *.exe */*.exe
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/mma'
> make -C biosig4c++ clean
> make[3]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++'
> rm -f *~
> rm -f *.a
> rm -f *.def
> rm -f *.dll
> rm -f *.dll.a
> rm -f *.i
> rm -f *.o
> rm -f *.so *.dylib
> rm -f *.so.*
> rm -f *.oct
> rm -f libbiosig.pc
> rm -f test/t1.*
> rm -f win32/*.exe win32/*.o* win32/*.lib win32/*.a
> rm -f win64/*.exe win64/*.o* win64/*.lib win64/*.a
> rm -f t240/*.o*
> rm -f t240/libcnsfef.a
> rm -f libbiosig.* libbiosig3.*
> rm -f pdp2gdf save2gdf physicalunits biosig_fhir biosig2gdf
> rm -f mma/biosig.exe mma/*/biosig.exe
> make -C java clean
> make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/java'
> rm *.h
> rm: cannot remove '*.h': No such file or directory
> make[4]: [Makefile:33: clean] Error 1 (ignored)
> rm *.o
> rm: cannot remove '*.o': No such file or directory
> make[4]: [Makefile:34: clean] Error 1 (ignored)
> rm *.cxx
> rm: cannot remove '*.cxx': No such file or directory
> make[4]: [Makefile:35: clean] Error 1 (ignored)
> rm *.so
> rm: cannot remove '*.so': No such file or directory
> make[4]: [Makefile:36: clean] Error 1 (ignored)
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/java'
> make -C mex clean
> make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/mex'
> rm -f *.o *.obj *.o64 core octave-core *.oct *.mex* mexSOPEN.cpp
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/mex'
> rm -f mex/mexbiosig*.src.tar.gz
> rm -f mex/biosig4octave*.src.tar.gz
> make -C mma clean
> make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/mma'
> ls: cannot access '/SystemFiles/Links/MathLink/DeveloperKit/*': No such file
> or directory
> mliver.c:5:10: fatal error: mathlink.h: No such file or directory
> 5 | #include <mathlink.h>
> | ^~~~~~~~~~~~
> compilation terminated.
> rm -f *.o* */*.o*
> rm -f *tm.c */*tm.c
> rm -f *.exe */*.exe
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/mma'
> make -C php clean
> make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/php'
> rm *.h
> rm: cannot remove '*.h': No such file or directory
> make[4]: [Makefile:19: clean] Error 1 (ignored)
> rm *.o
> rm: cannot remove '*.o': No such file or directory
> make[4]: [Makefile:20: clean] Error 1 (ignored)
> rm *.cpp
> rm: cannot remove '*.cpp': No such file or directory
> make[4]: [Makefile:21: clean] Error 1 (ignored)
> rm *.so
> rm: cannot remove '*.so': No such file or directory
> make[4]: [Makefile:22: clean] Error 1 (ignored)
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/php'
> make -C perl clean
> make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/perl'
> rm *.cxx
> rm: cannot remove '*.cxx': No such file or directory
> make[4]: [Makefile:21: clean] Error 1 (ignored)
> rm *.o
> rm: cannot remove '*.o': No such file or directory
> make[4]: [Makefile:22: clean] Error 1 (ignored)
> rm *.pm
> rm: cannot remove '*.pm': No such file or directory
> make[4]: [Makefile:23: clean] Error 1 (ignored)
> rm *.so
> rm: cannot remove '*.so': No such file or directory
> make[4]: [Makefile:24: clean] Error 1 (ignored)
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/perl'
> make -C R clean
> make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/R'
> rm *.o *.so *.gz biosig_2.5.0.tar.gz
> rm: cannot remove '*.o': No such file or directory
> rm: cannot remove '*.so': No such file or directory
> rm: cannot remove '*.gz': No such file or directory
> rm: cannot remove 'biosig_2.5.0.tar.gz': No such file or directory
> make[4]: *** [Makefile:10: clean] Error 1
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/R'
> make[3]: [Makefile:977: clean] Error 2 (ignored)
> make -C ruby clean
> make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/ruby'
> rm *.cxx
> rm: cannot remove '*.cxx': No such file or directory
> make[4]: [Makefile:20: clean] Error 1 (ignored)
> rm *.o
> rm: cannot remove '*.o': No such file or directory
> make[4]: [Makefile:21: clean] Error 1 (ignored)
> rm *.pm
> rm: cannot remove '*.pm': No such file or directory
> make[4]: [Makefile:22: clean] Error 1 (ignored)
> rm *.so
> rm: cannot remove '*.so': No such file or directory
> make[4]: [Makefile:23: clean] Error 1 (ignored)
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/ruby'
> make -C tcl clean
> make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/tcl'
> rm *.cxx
> rm: cannot remove '*.cxx': No such file or directory
> make[4]: [Makefile:19: clean] Error 1 (ignored)
> rm *.o
> rm: cannot remove '*.o': No such file or directory
> make[4]: [Makefile:20: clean] Error 1 (ignored)
> rm *.so
> rm: cannot remove '*.so': No such file or directory
> make[4]: [Makefile:21: clean] Error 1 (ignored)
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/tcl'
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++'
> rm mexbiosig*.src.tar.gz
> rm: cannot remove 'mexbiosig*.src.tar.gz': No such file or directory
> make[2]: [Makefile:44: clean] Error 1 (ignored)
> rm biosig4octave*.src.tar.gz
> make -C biosig4c++/python clean
> make[3]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/python'
> rm -rf build/*
> rm -rf dist/*
> rm *.so
> rm: cannot remove '*.so': No such file or directory
> make[3]: [Makefile:32: clean] Error 1 (ignored)
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/python'
> rm config.log
> rm config.status
> rm Makefile biosig4c++/Makefile biosig4c++/*/Makefile \
> biosig4c++/python/setup.py \
> biosig4c++/R/DESCRIPTION
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_autoreconf_clean
> dh_clean
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building biosig using existing ./biosig_2.5.0.orig.tar.xz
> dpkg-source: warning: ignoring deletion of file config.log, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file install-sh, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file configure, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file config.h.in, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file config.status, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of directory autom4te.cache
> dpkg-source: warning: ignoring deletion of file autom4te.cache/requests, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file autom4te.cache/output.1, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file autom4te.cache/traces.1, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file autom4te.cache/output.0, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file autom4te.cache/traces.0, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/units.i, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file
> biosig4c++/11073-10102-AnnexB.i, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/eventcodes.i, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/eventcodegroups.i,
> use --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/t240/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/magic/Makefile,
> use --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/tcl/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/igor/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/examples/Makefile,
> use --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/php/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/mma/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/perl/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/mex/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/t241/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/R/DESCRIPTION, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/R/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/java/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/ruby/Makefile, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/python/Makefile,
> use --include-removal to override
> dpkg-source: warning: ignoring deletion of file biosig4c++/python/setup.py,
> use --include-removal to override
> dpkg-source: info: local changes detected, the modified files are:
> biosig-2.5.0/config.h
> dpkg-source: error: aborting due to unexpected upstream changes, see
> /tmp/biosig_2.5.0-1.diff.TU0m6g
> dpkg-source: info: Hint: make sure the version in debian/changelog matches
> the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source
> --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/biosig_2.5.0-1_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: biosig
Source-Version: 2.5.2-2
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
biosig, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated biosig package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 06 Feb 2024 10:54:19 +0100
Source: biosig
Architecture: source
Version: 2.5.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1043666
Changes:
biosig (2.5.2-2) unstable; urgency=medium
.
* Team upload.
* Fix clean target
Closes: #1043666
Checksums-Sha1:
2ced51864a044e2d4f00ae262f0ded31dafc943e 2466 biosig_2.5.2-2.dsc
9e559ba180a1e61cf134bd6515f6ba9d64551422 15024 biosig_2.5.2-2.debian.tar.xz
5570a50f4b9d9ae5de46ea2f30acdee38645a28c 27190 biosig_2.5.2-2_amd64.buildinfo
Checksums-Sha256:
209297bbf81aafbf72190d429a44dbeca75cf9fcab355732c3e05a9cfab93b5b 2466
biosig_2.5.2-2.dsc
3ba30c57130fa7b54bac83be9bdbab563330cd93bd0a435966e1607be4c9a875 15024
biosig_2.5.2-2.debian.tar.xz
9e5e4ed72d1cf6860f96e9115047822fdf7e9ff0f589a490fd543f5ecbd2f418 27190
biosig_2.5.2-2_amd64.buildinfo
Files:
fa68c81099f1b4417464365df7b54e63 2466 science optional biosig_2.5.2-2.dsc
d33b405f180be5ffe0c7b4d6f1d49231 15024 science optional
biosig_2.5.2-2.debian.tar.xz
6de212f7c591330fb0a3c0538abd5c08 27190 science optional
biosig_2.5.2-2_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=EJM+
-----END PGP SIGNATURE-----
--- End Message ---
