Your message dated Fri, 09 Feb 2024 16:52:40 +0000
with message-id <[email protected]>
and subject line Bug#1045634: fixed in rna-star 2.7.11b+dfsg-1
has caused the Debian Bug report #1045634,
regarding rna-star: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1045634: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1045634
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: rna-star
Version: 2.7.10b+dfsg-2
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> ------------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package rna-star
> dpkg-buildpackage: info: source version 2.7.10b+dfsg-2
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Michael R. Crusoe
> <[email protected]>
> dpkg-source --before-build .
> debian/rules clean
> dh clean --sourcedirectory=source
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> cd source && /usr/bin/make clean
> make[2]: Entering directory '/<<PKGBUILDDIR>>/source'
> 'rm' -f *.o opal/opal.o STAR STARstatic STARlong Depend.list
> parametersDefault.xxd
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/source'
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_autoreconf_clean -O--sourcedirectory=source
> dh_clean -O--sourcedirectory=source
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building rna-star using existing
> ./rna-star_2.7.10b+dfsg.orig.tar.xz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: error: cannot represent change to source/STAR-avx: binary file
> contents changed
> dpkg-source: error: add source/STAR-avx in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STAR-avx' will not be
> represented in diff
> dpkg-source: error: cannot represent change to source/STAR-avx2: binary file
> contents changed
> dpkg-source: error: add source/STAR-avx2 in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STAR-avx2' will not be
> represented in diff
> dpkg-source: error: cannot represent change to source/STAR-plain: binary file
> contents changed
> dpkg-source: error: add source/STAR-plain in debian/source/include-binaries
> if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STAR-plain' will not be
> represented in diff
> dpkg-source: error: cannot represent change to source/STAR-sse3: binary file
> contents changed
> dpkg-source: error: add source/STAR-sse3 in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STAR-sse3' will not be
> represented in diff
> dpkg-source: error: cannot represent change to source/STAR-sse4.1: binary
> file contents changed
> dpkg-source: error: add source/STAR-sse4.1 in debian/source/include-binaries
> if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STAR-sse4.1' will not
> be represented in diff
> dpkg-source: error: cannot represent change to source/STAR-ssse3: binary file
> contents changed
> dpkg-source: error: add source/STAR-ssse3 in debian/source/include-binaries
> if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STAR-ssse3' will not be
> represented in diff
> dpkg-source: error: cannot represent change to source/STARlong-avx: binary
> file contents changed
> dpkg-source: error: add source/STARlong-avx in debian/source/include-binaries
> if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STARlong-avx' will not
> be represented in diff
> dpkg-source: error: cannot represent change to source/STARlong-avx2: binary
> file contents changed
> dpkg-source: error: add source/STARlong-avx2 in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STARlong-avx2' will not
> be represented in diff
> dpkg-source: error: cannot represent change to source/STARlong-plain: binary
> file contents changed
> dpkg-source: error: add source/STARlong-plain in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STARlong-plain' will
> not be represented in diff
> dpkg-source: error: cannot represent change to source/STARlong-sse3: binary
> file contents changed
> dpkg-source: error: add source/STARlong-sse3 in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STARlong-sse3' will not
> be represented in diff
> dpkg-source: error: cannot represent change to source/STARlong-sse4.1: binary
> file contents changed
> dpkg-source: error: add source/STARlong-sse4.1 in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STARlong-sse4.1' will
> not be represented in diff
> dpkg-source: error: cannot represent change to source/STARlong-ssse3: binary
> file contents changed
> dpkg-source: error: add source/STARlong-ssse3 in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: warning: executable mode 0755 of 'source/STARlong-ssse3' will
> not be represented in diff
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/rna-star_2.7.10b+dfsg-2_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: rna-star
Source-Version: 2.7.11b+dfsg-1
Done: Lance Lin <[email protected]>
We believe that the bug you reported is fixed in the latest version of
rna-star, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Lance Lin <[email protected]> (supplier of updated rna-star package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 09 Feb 2024 23:04:19 +0700
Source: rna-star
Architecture: source
Version: 2.7.11b+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Lance Lin <[email protected]>
Closes: 1045634
Changes:
rna-star (2.7.11b+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* d/rules: Remove override_dh_auto_clean
* d/clean: Remove generated files (Closes: #1045634)
* d/patches: Add patch to fix typos
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