Your message dated Wed, 28 Feb 2024 13:19:46 +0000
with message-id <[email protected]>
and subject line Bug#1061604: fixed in cctbx 2023.12+ds2+~3.17.0+ds1-4
has caused the Debian Bug report #1061604,
regarding cctbx: autopkgtest regression
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1061604: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1061604
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: cctbx
Version: 2023.12+ds2+~3.17.0+ds1-3
Severity: serious
User: [email protected]
Usertags: regression
Hi Maintainer
The cctbx's autopkgtest are failing [1], preventing migration. I've
copied what I hope is the relevant part of the log below.
I suspect there are missing (test) dependencies. Previously, gcc was
pulled in as a dependency through python3-pythran, through
python3-scipy. This is currently not the case.
Regards
Graham
[1] https://ci.debian.net/packages/c/cctbx/testing/amd64/
75s Standard error:
75s Traceback (most recent call last):
75s File
"/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py",
line 7, in <module>
75s import StringIO
75s ModuleNotFoundError: No module named 'StringIO'
78s Standard error:
78s Traceback (most recent call last):
78s File "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py",
line 95, in <module>
78s run(args=sys.argv[1:])
78s File "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py",
line 70, in run
78s exercise(verbose,
78s File "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py",
line 38, in exercise
78s cmd = comp_env.compilation_command(file_name_cpp=file_name_cpp)
78s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
78s File "/usr/lib/python3/dist-packages/fable/simple_compilation.py",
line 121, in compilation_command
78s return O.assemble_command(
78s ^^^^^^^^^^^^^^^^^^^
78s File "/usr/lib/python3/dist-packages/fable/simple_compilation.py",
line 91, in assemble_command
78s if (disable_warnings or O.gcc_version < 30400):
78s ^^^^^^^^^^^^^^^^^^^^^
78s TypeError: '<' not supported between instances of 'NoneType' and 'int'
78s libtbx.python
"/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py"
P31 [OK] 2.0s
--- End Message ---
--- Begin Message ---
Source: cctbx
Source-Version: 2023.12+ds2+~3.17.0+ds1-4
Done: Picca Frédéric-Emmanuel <[email protected]>
We believe that the bug you reported is fixed in the latest version of
cctbx, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Picca Frédéric-Emmanuel <[email protected]> (supplier of updated cctbx package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 28 Feb 2024 13:45:40 +0100
Source: cctbx
Architecture: source
Version: 2023.12+ds2+~3.17.0+ds1-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Picca Frédéric-Emmanuel <[email protected]>
Closes: 1061604
Changes:
cctbx (2023.12+ds2+~3.17.0+ds1-4) unstable; urgency=medium
.
* Bug fix: "autopkgtest regression", thanks to Graham Inggs (Closes:
#1061604).
- d/t/control: Added g++ in order to have a working c++ compiler for tests.
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