Your message dated Thu, 29 Feb 2024 10:05:28 +0000
with message-id <[email protected]>
and subject line Bug#1062238: fixed in libbpp-raa 2.4.1-7.1
has caused the Debian Bug report #1062238,
regarding libbpp-raa: NMU diff for 64-bit time_t transition
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1062238: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1062238
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: libbpp-raa
Version: 2.4.1-7
Severity: serious
Tags: patch pending
Justification: library ABI skew on upgrade
User: [email protected]
Usertags: time-t
Dear maintainer,
As part of the 64-bit time_t transition required to support 32-bit
architectures in 2038 and beyond
(https://wiki.debian.org/ReleaseGoals/64bit-time), we have identified
libbpp-raa as a source package shipping runtime libraries whose ABI
either is affected by the change in size of time_t, or could not be
analyzed via abi-compliance-checker (and therefore to be on the safe
side we assume is affected).
To ensure that inconsistent combinations of libraries with their
reverse-dependencies are never installed together, it is necessary to
have a library transition, which is most easily done by renaming the
runtime library package.
Since turning on 64-bit time_t is being handled centrally through a change
to the default dpkg-buildflags (https://bugs.debian.org/1037136), it is
important that libraries affected by this ABI change all be uploaded close
together in time. Therefore I have prepared a 0-day NMU for libbpp-raa
which will initially be uploaded to experimental if possible, then to
unstable after packages have cleared binary NEW.
Please find the patch for this NMU attached.
If you have any concerns about this patch, please reach out ASAP. Although
this package will be uploaded to experimental immediately, there will be a
period of several days before we begin uploads to unstable; so if information
becomes available that your package should not be included in the transition,
there is time for us to amend the planned uploads.
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 6.5.0-14-generic (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
diff -Nru libbpp-raa-2.4.1/debian/changelog libbpp-raa-2.4.1/debian/changelog
--- libbpp-raa-2.4.1/debian/changelog 2022-11-26 07:06:31.000000000 +0000
+++ libbpp-raa-2.4.1/debian/changelog 2024-01-31 20:05:05.000000000 +0000
@@ -1,3 +1,10 @@
+libbpp-raa (2.4.1-7.1) experimental; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition.
+
+ -- Steve Langasek <[email protected]> Wed, 31 Jan 2024 20:05:05 +0000
+
libbpp-raa (2.4.1-7) unstable; urgency=medium
* Fix watch file
diff -Nru libbpp-raa-2.4.1/debian/control libbpp-raa-2.4.1/debian/control
--- libbpp-raa-2.4.1/debian/control 2022-11-26 07:06:31.000000000 +0000
+++ libbpp-raa-2.4.1/debian/control 2024-01-31 20:05:05.000000000 +0000
@@ -18,7 +18,7 @@
Package: libbpp-raa-dev
Architecture: any
Section: libdevel
-Depends: libbpp-raa4 (= ${binary:Version}),
+Depends: libbpp-raa4t64 (= ${binary:Version}),
${misc:Depends},
libbpp-seq-dev
Multi-Arch: same
@@ -29,7 +29,10 @@
.
This package contains header files and static library.
-Package: libbpp-raa4
+Package: libbpp-raa4t64
+Provides: ${t64:Provides}
+Replaces: libbpp-raa4
+Breaks: libbpp-raa4 (<< ${source:Version})
Architecture: any
Section: libs
Depends: ${shlibs:Depends},
diff -Nru libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64
libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64
--- libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64 2022-11-26
07:06:31.000000000 +0000
+++ libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64 1970-01-01
00:00:00.000000000 +0000
@@ -1,186 +0,0 @@
-libbpp-raa.so.4 libbpp-raa4 #MINVER#
- _ZN3bpp14RaaSpeciesTree10firstChildEi@Base 2.4.1
- _ZN3bpp14RaaSpeciesTree11nextSynonymEi@Base 2.4.1
- _ZN3bpp14RaaSpeciesTree5countEi@Base 2.4.1
- _ZN3bpp14RaaSpeciesTree5labelB5cxx11Ei@Base 2.4.1
- _ZN3bpp14RaaSpeciesTree6getTidEi@Base 2.4.1
- _ZN3bpp14RaaSpeciesTree6parentEi@Base 2.4.1
- _ZN3bpp14RaaSpeciesTree7getNameB5cxx11Ei@Base 2.4.1
- _ZN3bpp14RaaSpeciesTree7isChildEii@Base 2.4.1
-
_ZN3bpp14RaaSpeciesTree8findNodeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb@Base
2.4.1
- _ZN3bpp14RaaSpeciesTree8findNodeEi@Base 2.4.1
- _ZN3bpp14RaaSpeciesTree8getMajorEi@Base 2.4.1
- _ZN3bpp14RaaSpeciesTree9nextChildEii@Base 2.4.1
- _ZN3bpp16BadCharExceptionD0Ev@Base 2.4.1
- _ZN3bpp16BadCharExceptionD1Ev@Base 2.4.1
- _ZN3bpp16BadCharExceptionD2Ev@Base 2.4.1
- _ZN3bpp17AlphabetExceptionD0Ev@Base 2.4.1
- _ZN3bpp17AlphabetExceptionD1Ev@Base 2.4.1
- _ZN3bpp17AlphabetExceptionD2Ev@Base 2.4.1
- _ZN3bpp3RAA10deleteListEPNS_7RaaListE@Base 2.4.1
-
_ZN3bpp3RAA10getSeqFragERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiiRS6_@Base
2.4.1
-
_ZN3bpp3RAA10getSeqFragEiiiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
-
_ZN3bpp3RAA11getSeq_bothERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii@Base
2.4.1
-
_ZN3bpp3RAA12openDatabaseERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPFPcPvESA_@Base
2.4.1
-
_ZN3bpp3RAA12processQueryERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base
2.4.1
-
_ZN3bpp3RAA12translateCDSERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
- _ZN3bpp3RAA12translateCDSEi@Base 2.4.1
- _ZN3bpp3RAA13closeDatabaseEv@Base 2.4.1
-
_ZN3bpp3RAA13getAttributesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
- _ZN3bpp3RAA13getAttributesEi@Base 2.4.1
- _ZN3bpp3RAA14getNextFeatureEPv@Base 2.4.1
-
_ZN3bpp3RAA14keywordPatternERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
-
_ZN3bpp3RAA14knownDatabasesERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EESA_@Base
2.4.1
-
_ZN3bpp3RAA15createEmptyListERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base
2.4.1
- _ZN3bpp3RAA15freeSpeciesTreeEPNS_14RaaSpeciesTreeE@Base 2.4.1
- _ZN3bpp3RAA15loadSpeciesTreeEb@Base 2.4.1
-
_ZN3bpp3RAA16getDirectFeatureERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_S8_@Base
2.4.1
- _ZN3bpp3RAA16getNextAnnotLineB5cxx11Ev@Base 2.4.1
- _ZN3bpp3RAA17getFirstAnnotLineB5cxx11Ei@Base 2.4.1
- _ZN3bpp3RAA18listAllFeatureKeysB5cxx11Ev@Base 2.4.1
- _ZN3bpp3RAA18translateInitCodonEi@Base 2.4.1
-
_ZN3bpp3RAA19nextMatchingKeywordERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
-
_ZN3bpp3RAA20prepareGetAnyFeatureEiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
- _ZN3bpp3RAA21getAnnotLineAtAddressB5cxx11ENS_10RaaAddressE@Base 2.4.1
- _ZN3bpp3RAA21listDirectFeatureKeysB5cxx11Ev@Base 2.4.1
- _ZN3bpp3RAA22getCurrentAnnotAddressEv@Base 2.4.1
- _ZN3bpp3RAA22interruptGetAnyFeatureEPv@Base 2.4.1
-
_ZN3bpp3RAA6getSeqERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi@Base
2.4.1
- _ZN3bpp3RAA6getSeqEii@Base 2.4.1
- _ZN3bpp3RAAC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_@Base
2.4.1
- _ZN3bpp3RAAC1EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
- _ZN3bpp3RAAC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_@Base
2.4.1
- _ZN3bpp3RAAC2EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
- _ZN3bpp3RAAD1Ev@Base 2.4.1
- _ZN3bpp3RAAD2Ev@Base 2.4.1
- _ZN3bpp7RaaList10addElementEi@Base 2.4.1
- _ZN3bpp7RaaList11nextElementEv@Base 2.4.1
- _ZN3bpp7RaaList11parentsOnlyEv@Base 2.4.1
- _ZN3bpp7RaaList12LIST_SPECIESB5cxx11E@Base 2.4.1
- _ZN3bpp7RaaList12firstElementEv@Base 2.4.1
-
_ZN3bpp7RaaList12modifyByDateERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base
2.4.1
- _ZN3bpp7RaaList12residueCountB5cxx11Ev@Base 2.4.1
- _ZN3bpp7RaaList13LIST_KEYWORDSB5cxx11E@Base 2.4.1
- _ZN3bpp7RaaList13removeElementEi@Base 2.4.1
- _ZN3bpp7RaaList14LIST_SEQUENCESB5cxx11E@Base 2.4.1
-
_ZN3bpp7RaaList14modifyByLengthERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base
2.4.1
- _ZN3bpp7RaaList7setFromEi@Base 2.4.1
- _ZN3bpp7RaaList8getCountEv@Base 2.4.1
- _ZN3bpp7RaaList8isInListEi@Base 2.4.1
- _ZN3bpp7RaaList8zeroListEv@Base 2.4.1
- _ZN3bpp7RaaListC1Ev@Base 2.4.1
- _ZN3bpp7RaaListC2Ev@Base 2.4.1
- _ZNK3bpp17AlphabetException11getAlphabetEv@Base 2.4.1
-
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base
2.4.1
-
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base
2.4.1
-
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm@Base
2.4.1
-
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base
2.4.1
-
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base
2.4.1
-
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base
2.4.1
- _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base
2.4.1
- _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base
2.4.1
-
_ZSt18__do_uninit_fill_nIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmS5_ET_S7_T0_RKT1_@Base
2.4.1
- _ZTINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
- _ZTSNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
- ajout_reponse@Base 2.4.1
- aminoacids@Base 2.4.1
- atoi_u@Base 2.4.1
- calc_codon_number@Base 2.4.1
- chg_acnuc@Base 2.4.1
- clear_reponse@Base 2.4.1
- close_sock_gz_r@Base 2.4.1
- codaa@Base 2.4.1
- compact@Base 2.4.1
- compch@Base 2.4.1
- complementer_base@Base 2.4.1
- complementer_seq@Base 2.4.1
- genetic_code@Base 2.4.1
- get_acnuc_gc_number@Base 2.4.1
- get_code_descr@Base 2.4.1
- get_ncbi_gc_number@Base 2.4.1
- gets_no_echo@Base 2.4.1
- init_codon_to_aa@Base 2.4.1
- initreponse@Base 2.4.1
- majuscules@Base 2.4.1
- mycalloc@Base 2.4.1
- notrail2@Base 2.4.1
- padtosize@Base 2.4.1
- parse@Base 2.4.1
- prepare_sock_gz_r@Base 2.4.1
- prepch@Base 2.4.1
- print_raa_long@Base 2.4.1
- raa_1_coordinate_set@Base 2.4.1
- raa_MD5String@Base 2.4.1
- raa_acnucclose@Base 2.4.1
- raa_acnucopen@Base 2.4.1
- raa_acnucopen_alt@Base 2.4.1
- raa_alllistranks@Base 2.4.1
- raa_bcount@Base 2.4.1
- raa_bit0@Base 2.4.1
- raa_bit1@Base 2.4.1
- raa_btest@Base 2.4.1
- raa_copylist@Base 2.4.1
- raa_countfilles@Base 2.4.1
- raa_decode_address@Base 2.4.1
- raa_error_mess_proc@Base 2.4.1
- raa_fcode@Base 2.4.1
- raa_followshrt2@Base 2.4.1
- raa_get_taxon_info@Base 2.4.1
- raa_getattributes@Base 2.4.1
- raa_getemptylist@Base 2.4.1
- raa_getlistrank@Base 2.4.1
- raa_getliststate@Base 2.4.1
- raa_gfrag@Base 2.4.1
- raa_ghelp@Base 2.4.1
- raa_iknum@Base 2.4.1
- raa_isenum@Base 2.4.1
- raa_knowndbs@Base 2.4.1
- raa_loadtaxonomy@Base 2.4.1
- raa_modifylist@Base 2.4.1
- raa_next_annots@Base 2.4.1
- raa_nexteltinlist@Base 2.4.1
- raa_nexteltinlist_annots@Base 2.4.1
- raa_nextmatchkey@Base 2.4.1
- raa_open_socket@Base 2.4.1
- raa_opendb@Base 2.4.1
- raa_opendb_pw@Base 2.4.1
- raa_prep_acnuc_query@Base 2.4.1
- raa_prep_coordinates@Base 2.4.1
- raa_proc_query@Base 2.4.1
- raa_read_annots@Base 2.4.1
- raa_read_first_rec@Base 2.4.1
- raa_readacc@Base 2.4.1
- raa_readext@Base 2.4.1
- raa_readkey@Base 2.4.1
- raa_readlng@Base 2.4.1
- raa_readloc@Base 2.4.1
- raa_readshrt@Base 2.4.1
- raa_readsmj@Base 2.4.1
- raa_readspec@Base 2.4.1
- raa_readsub@Base 2.4.1
- raa_readsub_pannots@Base 2.4.1
- raa_releaselist@Base 2.4.1
- raa_residuecount@Base 2.4.1
- raa_savelist@Base 2.4.1
- raa_seq_to_annots@Base 2.4.1
- raa_seqrank_attributes@Base 2.4.1
- raa_setlistname@Base 2.4.1
- raa_setliststate@Base 2.4.1
- raa_short_descr@Base 2.4.1
- raa_translate_cds@Base 2.4.1
- raa_translate_init_codon@Base 2.4.1
- raa_zerolist@Base 2.4.1
- read_sock@Base 2.4.1
- read_sock_timeout@Base 2.4.1
- scan_raa_long@Base 2.4.1
- sock_flush@Base 2.4.1
- sock_fputs@Base 2.4.1
- sock_printf@Base 2.4.1
- strcmptrail@Base 2.4.1
- totcodes@Base 2.4.1
- trim_key@Base 2.4.1
- unprotect_quotes@Base 2.4.1
- val@Base 2.4.1
- z_getc@Base 2.4.1
- z_gets@Base 2.4.1
- z_read_sock@Base 2.4.1
diff -Nru libbpp-raa-2.4.1/debian/libbpp-raa4t64.amd64
libbpp-raa-2.4.1/debian/libbpp-raa4t64.amd64
--- libbpp-raa-2.4.1/debian/libbpp-raa4t64.amd64 1970-01-01
00:00:00.000000000 +0000
+++ libbpp-raa-2.4.1/debian/libbpp-raa4t64.amd64 2022-11-26
07:06:31.000000000 +0000
@@ -0,0 +1,186 @@
+libbpp-raa.so.4 libbpp-raa4 #MINVER#
+ _ZN3bpp14RaaSpeciesTree10firstChildEi@Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree11nextSynonymEi@Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree5countEi@Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree5labelB5cxx11Ei@Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree6getTidEi@Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree6parentEi@Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree7getNameB5cxx11Ei@Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree7isChildEii@Base 2.4.1
+
_ZN3bpp14RaaSpeciesTree8findNodeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb@Base
2.4.1
+ _ZN3bpp14RaaSpeciesTree8findNodeEi@Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree8getMajorEi@Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree9nextChildEii@Base 2.4.1
+ _ZN3bpp16BadCharExceptionD0Ev@Base 2.4.1
+ _ZN3bpp16BadCharExceptionD1Ev@Base 2.4.1
+ _ZN3bpp16BadCharExceptionD2Ev@Base 2.4.1
+ _ZN3bpp17AlphabetExceptionD0Ev@Base 2.4.1
+ _ZN3bpp17AlphabetExceptionD1Ev@Base 2.4.1
+ _ZN3bpp17AlphabetExceptionD2Ev@Base 2.4.1
+ _ZN3bpp3RAA10deleteListEPNS_7RaaListE@Base 2.4.1
+
_ZN3bpp3RAA10getSeqFragERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiiRS6_@Base
2.4.1
+
_ZN3bpp3RAA10getSeqFragEiiiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
+
_ZN3bpp3RAA11getSeq_bothERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii@Base
2.4.1
+
_ZN3bpp3RAA12openDatabaseERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPFPcPvESA_@Base
2.4.1
+
_ZN3bpp3RAA12processQueryERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base
2.4.1
+
_ZN3bpp3RAA12translateCDSERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
+ _ZN3bpp3RAA12translateCDSEi@Base 2.4.1
+ _ZN3bpp3RAA13closeDatabaseEv@Base 2.4.1
+
_ZN3bpp3RAA13getAttributesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
+ _ZN3bpp3RAA13getAttributesEi@Base 2.4.1
+ _ZN3bpp3RAA14getNextFeatureEPv@Base 2.4.1
+
_ZN3bpp3RAA14keywordPatternERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
+
_ZN3bpp3RAA14knownDatabasesERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EESA_@Base
2.4.1
+
_ZN3bpp3RAA15createEmptyListERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base
2.4.1
+ _ZN3bpp3RAA15freeSpeciesTreeEPNS_14RaaSpeciesTreeE@Base 2.4.1
+ _ZN3bpp3RAA15loadSpeciesTreeEb@Base 2.4.1
+
_ZN3bpp3RAA16getDirectFeatureERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_S8_@Base
2.4.1
+ _ZN3bpp3RAA16getNextAnnotLineB5cxx11Ev@Base 2.4.1
+ _ZN3bpp3RAA17getFirstAnnotLineB5cxx11Ei@Base 2.4.1
+ _ZN3bpp3RAA18listAllFeatureKeysB5cxx11Ev@Base 2.4.1
+ _ZN3bpp3RAA18translateInitCodonEi@Base 2.4.1
+
_ZN3bpp3RAA19nextMatchingKeywordERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
+
_ZN3bpp3RAA20prepareGetAnyFeatureEiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
+ _ZN3bpp3RAA21getAnnotLineAtAddressB5cxx11ENS_10RaaAddressE@Base 2.4.1
+ _ZN3bpp3RAA21listDirectFeatureKeysB5cxx11Ev@Base 2.4.1
+ _ZN3bpp3RAA22getCurrentAnnotAddressEv@Base 2.4.1
+ _ZN3bpp3RAA22interruptGetAnyFeatureEPv@Base 2.4.1
+
_ZN3bpp3RAA6getSeqERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi@Base
2.4.1
+ _ZN3bpp3RAA6getSeqEii@Base 2.4.1
+ _ZN3bpp3RAAC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_@Base
2.4.1
+ _ZN3bpp3RAAC1EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
+ _ZN3bpp3RAAC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_@Base
2.4.1
+ _ZN3bpp3RAAC2EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
+ _ZN3bpp3RAAD1Ev@Base 2.4.1
+ _ZN3bpp3RAAD2Ev@Base 2.4.1
+ _ZN3bpp7RaaList10addElementEi@Base 2.4.1
+ _ZN3bpp7RaaList11nextElementEv@Base 2.4.1
+ _ZN3bpp7RaaList11parentsOnlyEv@Base 2.4.1
+ _ZN3bpp7RaaList12LIST_SPECIESB5cxx11E@Base 2.4.1
+ _ZN3bpp7RaaList12firstElementEv@Base 2.4.1
+
_ZN3bpp7RaaList12modifyByDateERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base
2.4.1
+ _ZN3bpp7RaaList12residueCountB5cxx11Ev@Base 2.4.1
+ _ZN3bpp7RaaList13LIST_KEYWORDSB5cxx11E@Base 2.4.1
+ _ZN3bpp7RaaList13removeElementEi@Base 2.4.1
+ _ZN3bpp7RaaList14LIST_SEQUENCESB5cxx11E@Base 2.4.1
+
_ZN3bpp7RaaList14modifyByLengthERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base
2.4.1
+ _ZN3bpp7RaaList7setFromEi@Base 2.4.1
+ _ZN3bpp7RaaList8getCountEv@Base 2.4.1
+ _ZN3bpp7RaaList8isInListEi@Base 2.4.1
+ _ZN3bpp7RaaList8zeroListEv@Base 2.4.1
+ _ZN3bpp7RaaListC1Ev@Base 2.4.1
+ _ZN3bpp7RaaListC2Ev@Base 2.4.1
+ _ZNK3bpp17AlphabetException11getAlphabetEv@Base 2.4.1
+
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base
2.4.1
+
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base
2.4.1
+
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm@Base
2.4.1
+
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base
2.4.1
+
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base
2.4.1
+
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base
2.4.1
+ _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base
2.4.1
+ _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base
2.4.1
+
_ZSt18__do_uninit_fill_nIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmS5_ET_S7_T0_RKT1_@Base
2.4.1
+ _ZTINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
+ _ZTSNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
+ ajout_reponse@Base 2.4.1
+ aminoacids@Base 2.4.1
+ atoi_u@Base 2.4.1
+ calc_codon_number@Base 2.4.1
+ chg_acnuc@Base 2.4.1
+ clear_reponse@Base 2.4.1
+ close_sock_gz_r@Base 2.4.1
+ codaa@Base 2.4.1
+ compact@Base 2.4.1
+ compch@Base 2.4.1
+ complementer_base@Base 2.4.1
+ complementer_seq@Base 2.4.1
+ genetic_code@Base 2.4.1
+ get_acnuc_gc_number@Base 2.4.1
+ get_code_descr@Base 2.4.1
+ get_ncbi_gc_number@Base 2.4.1
+ gets_no_echo@Base 2.4.1
+ init_codon_to_aa@Base 2.4.1
+ initreponse@Base 2.4.1
+ majuscules@Base 2.4.1
+ mycalloc@Base 2.4.1
+ notrail2@Base 2.4.1
+ padtosize@Base 2.4.1
+ parse@Base 2.4.1
+ prepare_sock_gz_r@Base 2.4.1
+ prepch@Base 2.4.1
+ print_raa_long@Base 2.4.1
+ raa_1_coordinate_set@Base 2.4.1
+ raa_MD5String@Base 2.4.1
+ raa_acnucclose@Base 2.4.1
+ raa_acnucopen@Base 2.4.1
+ raa_acnucopen_alt@Base 2.4.1
+ raa_alllistranks@Base 2.4.1
+ raa_bcount@Base 2.4.1
+ raa_bit0@Base 2.4.1
+ raa_bit1@Base 2.4.1
+ raa_btest@Base 2.4.1
+ raa_copylist@Base 2.4.1
+ raa_countfilles@Base 2.4.1
+ raa_decode_address@Base 2.4.1
+ raa_error_mess_proc@Base 2.4.1
+ raa_fcode@Base 2.4.1
+ raa_followshrt2@Base 2.4.1
+ raa_get_taxon_info@Base 2.4.1
+ raa_getattributes@Base 2.4.1
+ raa_getemptylist@Base 2.4.1
+ raa_getlistrank@Base 2.4.1
+ raa_getliststate@Base 2.4.1
+ raa_gfrag@Base 2.4.1
+ raa_ghelp@Base 2.4.1
+ raa_iknum@Base 2.4.1
+ raa_isenum@Base 2.4.1
+ raa_knowndbs@Base 2.4.1
+ raa_loadtaxonomy@Base 2.4.1
+ raa_modifylist@Base 2.4.1
+ raa_next_annots@Base 2.4.1
+ raa_nexteltinlist@Base 2.4.1
+ raa_nexteltinlist_annots@Base 2.4.1
+ raa_nextmatchkey@Base 2.4.1
+ raa_open_socket@Base 2.4.1
+ raa_opendb@Base 2.4.1
+ raa_opendb_pw@Base 2.4.1
+ raa_prep_acnuc_query@Base 2.4.1
+ raa_prep_coordinates@Base 2.4.1
+ raa_proc_query@Base 2.4.1
+ raa_read_annots@Base 2.4.1
+ raa_read_first_rec@Base 2.4.1
+ raa_readacc@Base 2.4.1
+ raa_readext@Base 2.4.1
+ raa_readkey@Base 2.4.1
+ raa_readlng@Base 2.4.1
+ raa_readloc@Base 2.4.1
+ raa_readshrt@Base 2.4.1
+ raa_readsmj@Base 2.4.1
+ raa_readspec@Base 2.4.1
+ raa_readsub@Base 2.4.1
+ raa_readsub_pannots@Base 2.4.1
+ raa_releaselist@Base 2.4.1
+ raa_residuecount@Base 2.4.1
+ raa_savelist@Base 2.4.1
+ raa_seq_to_annots@Base 2.4.1
+ raa_seqrank_attributes@Base 2.4.1
+ raa_setlistname@Base 2.4.1
+ raa_setliststate@Base 2.4.1
+ raa_short_descr@Base 2.4.1
+ raa_translate_cds@Base 2.4.1
+ raa_translate_init_codon@Base 2.4.1
+ raa_zerolist@Base 2.4.1
+ read_sock@Base 2.4.1
+ read_sock_timeout@Base 2.4.1
+ scan_raa_long@Base 2.4.1
+ sock_flush@Base 2.4.1
+ sock_fputs@Base 2.4.1
+ sock_printf@Base 2.4.1
+ strcmptrail@Base 2.4.1
+ totcodes@Base 2.4.1
+ trim_key@Base 2.4.1
+ unprotect_quotes@Base 2.4.1
+ val@Base 2.4.1
+ z_getc@Base 2.4.1
+ z_gets@Base 2.4.1
+ z_read_sock@Base 2.4.1
diff -Nru libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides
libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides
--- libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides 1970-01-01
00:00:00.000000000 +0000
+++ libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides 2024-01-31
20:05:05.000000000 +0000
@@ -0,0 +1 @@
+libbpp-raa4t64: package-name-doesnt-match-sonames libbpp-raa4
--- End Message ---
--- Begin Message ---
Source: libbpp-raa
Source-Version: 2.4.1-7.1
Done: Lukas Märdian <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libbpp-raa, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Lukas Märdian <[email protected]> (supplier of updated libbpp-raa package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 29 Feb 2024 09:35:26 +0000
Source: libbpp-raa
Architecture: source
Version: 2.4.1-7.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Lukas Märdian <[email protected]>
Closes: 1062238
Changes:
libbpp-raa (2.4.1-7.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Rename libraries for 64-bit time_t transition. Closes: #1062238
Checksums-Sha1:
95a0d6ba245082a7031db2e282e523a4f778becc 2179 libbpp-raa_2.4.1-7.1.dsc
1b4d0f93f6536d66c24d9595e31ca8a7eba45ee5 12020
libbpp-raa_2.4.1-7.1.debian.tar.xz
0172038ee0f0e39a9add1a4cbdb811d7d0ec6b6b 7521
libbpp-raa_2.4.1-7.1_source.buildinfo
Checksums-Sha256:
43d07bcd8b5ad9e741eeb2d1a22f94f597c82ffba8aa5a2642aa14eaedfafc9d 2179
libbpp-raa_2.4.1-7.1.dsc
a498ac18e8baeb3077bf8298b0149bea89740ef25f9cf98a41a60463b2fe1372 12020
libbpp-raa_2.4.1-7.1.debian.tar.xz
56640af18f98f689d1c8b9622f4489c3456c0808695761ec5c037b80a94fbde4 7521
libbpp-raa_2.4.1-7.1_source.buildinfo
Files:
fb030056cd8aee95d903e38476682606 2179 science optional libbpp-raa_2.4.1-7.1.dsc
0a0eee345eb862105cf3cd3e82e6e0d1 12020 science optional
libbpp-raa_2.4.1-7.1.debian.tar.xz
51225763bac7bc4a9125a85dbd19d1cf 7521 science optional
libbpp-raa_2.4.1-7.1_source.buildinfo
-----BEGIN PGP SIGNATURE-----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=bS26
-----END PGP SIGNATURE-----
pgpK1DIU3nYwI.pgp
Description: PGP signature
--- End Message ---
