Your message dated Mon, 04 Mar 2024 20:36:30 +0000
with message-id <[email protected]>
and subject line Bug#1047073: fixed in libbio-asn1-entrezgene-perl 1.730-3
has caused the Debian Bug report #1047073,
regarding libbio-asn1-entrezgene-perl: Fails to build source after successful
build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1047073: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1047073
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: libbio-asn1-entrezgene-perl
Version: 1.730-2
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> -------------------------------------------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package libbio-asn1-entrezgene-perl
> dpkg-buildpackage: info: source version 1.730-2
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by gregor herrmann <[email protected]>
> dpkg-source --before-build .
> debian/rules clean
> dh clean
> dh_auto_clean
> make -j8 distclean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> "/usr/bin/perl" "-MExtUtils::Manifest=fullcheck" -e fullcheck
> rm -f \
> EntrezGene.bso EntrezGene.def \
> EntrezGene.exp EntrezGene.x \
> blib/arch/auto/Bio/ASN1/EntrezGene/extralibs.all \
> blib/arch/auto/Bio/ASN1/EntrezGene/extralibs.ld Makefile.aperl \
> *.a *.o \
> *perl.core MYMETA.json \
> MYMETA.yml blibdirs.ts \
> core core.*perl.*.? \
> core.[0-9] core.[0-9][0-9] \
> core.[0-9][0-9][0-9] core.[0-9][0-9][0-9][0-9] \
> core.[0-9][0-9][0-9][0-9][0-9] libEntrezGene.def \
> mon.out perl \
> perl perl.exe \
> perlmain.c pm_to_blib \
> pm_to_blib.ts so_locations \
> tmon.out
> rm -rf \
> blib
> mv Makefile Makefile.old > /dev/null 2>&1
> rm -f \
> Makefile Makefile.old
> rm -rf \
> Bio-ASN1-EntrezGene-1.73
> Not in MANIFEST: .pc/.quilt_patches
> Not in MANIFEST: .pc/.quilt_series
> Not in MANIFEST: .pc/.version
> Not in MANIFEST: .pc/applied-patches
> Not in MANIFEST:
> debian/.debhelper/generated/libbio-asn1-entrezgene-perl/dh_installchangelogs.dch.trimmed
> Not in MANIFEST:
> debian/.debhelper/generated/libbio-asn1-entrezgene-perl/installed-by-dh_installdocs
> Not in MANIFEST:
> debian/.debhelper/generated/libbio-asn1-entrezgene-perl/installed-by-dh_installexamples
> Not in MANIFEST:
> debian/.debhelper/generated/libbio-asn1-entrezgene-perl/installed-by-dh_installman
> Not in MANIFEST: debian/changelog
> Not in MANIFEST: debian/control
> Not in MANIFEST: debian/copyright
> Not in MANIFEST: debian/debhelper-build-stamp
> Not in MANIFEST: debian/files
> Not in MANIFEST: debian/libbio-asn1-entrezgene-perl.examples
> Not in MANIFEST: debian/libbio-asn1-entrezgene-perl.substvars
> Not in MANIFEST: debian/libbio-asn1-entrezgene-perl/DEBIAN/control
> Not in MANIFEST: debian/libbio-asn1-entrezgene-perl/DEBIAN/md5sums
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/doc/libbio-asn1-entrezgene-perl/changelog.Debian.gz
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/doc/libbio-asn1-entrezgene-perl/changelog.gz
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/doc/libbio-asn1-entrezgene-perl/copyright
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/doc/libbio-asn1-entrezgene-perl/examples/indexer_test.pl
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/doc/libbio-asn1-entrezgene-perl/examples/parse_entrez_gene_example.pl
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/doc/libbio-asn1-entrezgene-perl/examples/parse_sequence_example.pl
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/doc/libbio-asn1-entrezgene-perl/examples/regex_parser_test.pl
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::EntrezGene.3pm.gz
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::EntrezGene::Indexer.3pm.gz
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::Sequence.3pm.gz
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::Sequence::Indexer.3pm.gz
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::SeqIO::entrezgene.3pm.gz
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/EntrezGene.pm
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/EntrezGene/Indexer.pm
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/Sequence.pm
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/Sequence/Indexer.pm
> Not in MANIFEST:
> debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/SeqIO/entrezgene.pm
> Not in MANIFEST: debian/rules
> Not in MANIFEST: debian/source/format
> Not in MANIFEST: debian/upstream/metadata
> Not in MANIFEST: debian/watch
> Not in MANIFEST: t/testgene.idx
> Not in MANIFEST: t/testseq.idx
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_clean
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building libbio-asn1-entrezgene-perl using existing
> ./libbio-asn1-entrezgene-perl_1.730.orig.tar.gz
> dpkg-source: error: cannot represent change to t/testgene.idx: binary file
> contents changed
> dpkg-source: error: add t/testgene.idx in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to t/testseq.idx: binary file
> contents changed
> dpkg-source: error: add t/testseq.idx in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 29
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/libbio-asn1-entrezgene-perl_1.730-2_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: libbio-asn1-entrezgene-perl
Source-Version: 1.730-3
Done: gregor herrmann <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libbio-asn1-entrezgene-perl, which is due to be installed in the Debian FTP
archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
gregor herrmann <[email protected]> (supplier of updated
libbio-asn1-entrezgene-perl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 04 Mar 2024 21:17:51 +0100
Source: libbio-asn1-entrezgene-perl
Architecture: source
Version: 1.730-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Perl Group <[email protected]>
Changed-By: gregor herrmann <[email protected]>
Closes: 1047073
Changes:
libbio-asn1-entrezgene-perl (1.730-3) unstable; urgency=medium
.
[ Debian Janitor ]
* Update standards version to 4.6.0, no changes needed.
.
[ gregor herrmann ]
* Remove generated test files via debian/clean. (Closes: #1047073)
* Update years of packaging copyright.
* Declare compliance with Debian Policy 4.6.2.
* Drop old Breaks/Replaces from dependencies.
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