Your message dated Tue, 09 Apr 2024 16:47:08 +0000
with message-id <[email protected]>
and subject line Bug#1068341: fixed in bioawk 1.0-4+deb12u1
has caused the Debian Bug report #1068341,
regarding bioawk: FTBFS randomly due to Makefile bug: cp: cannot create regular
file 'ytab.c': File exists
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1068341: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1068341
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:bioawk
Version: 1.0-4
Severity: important
Tags: ftbfs patch
Dear maintainer:
This package fails to build from source in a random fashion
due to what it seems to be a Makefile bug:
This is from my own autobuilder:
make[1]: Entering directory '/<<PKGBUILDDIR>>'
bison -y -d awkgram.y
bison -y -d awkgram.y
awkgram.y: warning: 43 shift/reduce conflicts [-Wconflicts-sr]
awkgram.y: warning: 85 reduce/reduce conflicts [-Wconflicts-rr]
awkgram.y: note: rerun with option '-Wcounterexamples' to generate conflict
counterexamples
awkgram.y: warning: 43 shift/reduce conflicts [-Wconflicts-sr]
awkgram.y: warning: 85 reduce/reduce conflicts [-Wconflicts-rr]
awkgram.y: note: rerun with option '-Wcounterexamples' to generate conflict
counterexamples
cp y.tab.c ytab.c
cp y.tab.c ytab.c
cp: cannot create regular file 'ytab.c': File exists
make[1]: *** [Makefile:49: ytab.h] Error 1
make[1]: *** Waiting for unfinished jobs....
cp y.tab.h ytab.h
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=for
mat-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ytab.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j2 "INSTALL=install --strip-program=true" returned
exit code 2
make: *** [debian/rules:8: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
This has also happened on the buildds several times:
https://buildd.debian.org/status/fetch.php?pkg=bioawk&arch=sparc64&ver=1.0-2&stamp=1614438070&raw=0
https://buildd.debian.org/status/fetch.php?pkg=bioawk&arch=riscv64&ver=1.0-2&stamp=1614441112&raw=0
https://buildd.debian.org/status/fetch.php?pkg=bioawk&arch=armhf&ver=1.0-3&stamp=1614527051&raw=0
I believe the error happens when the same target is being executed twice at the
same time.
Given that the package is very small and it builds in a few seconds, I suggest
disabling parallel build as a simple and effective way to fix the problem.
Patch attached.
Thanks.
--- a/debian/rules
+++ b/debian/rules
@@ -5,7 +5,7 @@ DPKG_EXPORT_BUILDTOOLS = nonempty
include /usr/share/dpkg/buildtools.mk
%:
- dh $@
+ dh $@ --no-parallel
override_dh_auto_configure:
--- End Message ---
--- Begin Message ---
Source: bioawk
Source-Version: 1.0-4+deb12u1
Done: Santiago Vila <[email protected]>
We believe that the bug you reported is fixed in the latest version of
bioawk, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Santiago Vila <[email protected]> (supplier of updated bioawk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 08 Apr 2024 19:40:00 +0200
Source: bioawk
Architecture: source
Version: 1.0-4+deb12u1
Distribution: bookworm
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Santiago Vila <[email protected]>
Closes: 1068341
Changes:
bioawk (1.0-4+deb12u1) bookworm; urgency=medium
.
* Team upload.
* debian/rules: Add --no-parallel to avoid the effects of a Makefile bug
which
makes the package to FTBFS randomly. Closes: #1068341.
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