Your message dated Tue, 28 May 2024 14:58:12 +0000 with message-id <[email protected]> and subject line Bug#1072070: Removed package(s) from unstable has caused the Debian Bug report #1071359, regarding r-cran-rniftilib: FTBFS: nifti1_io.c:472:8: error: format not a string literal and no format arguments to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 1071359: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1071359 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:r-cran-rniftilib Version: 0.0-35.r79-7 Severity: serious Tags: ftbfs Dear maintainer: During a rebuild of all packages in unstable, your package failed to build: -------------------------------------------------------------------------------- [...] debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R configure.ac:2: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:2: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:2: the top level configure.ac:10: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:10: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:10: the top level configure.ac:25: warning: The macro `CHECK_ZLIB' is obsolete. configure.ac:25: You should run autoupdate. aclocal.m4:81: CHECK_ZLIB is expanded from... configure.ac:25: the top level dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-rniftilib/ -O--buildsystem=R I: R Package: Rniftilib Version: 0.0-35 I: Building using R version 4.4.0-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 22 Dec 2023 08:50:35 +0100 mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-rniftilib/usr/lib/R/site-library R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-rniftilib/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 22 Dec 2023 08:50:35 +0100'" * installing *source* package ‘Rniftilib’ ... ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ -std=gnu++17 accepts -g... yes checking for g++ -std=gnu++17 option to enable C++11 features... none needed checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for inline... inline checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for pkg-config... /usr/bin/pkg-config checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking for zlib.h... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating tools/config.h ** libs using C compiler: ‘gcc (Debian 13.2.0-25) 13.2.0’ make[1]: Entering directory '/<<PKGBUILDDIR>>/src' gcc -I"/usr/share/R/include" -DNDEBUG -I../tools -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Rnifti.c -o Rnifti.o Rnifti.c: In function ‘Rnifti_disp_lib_version’: Rnifti.c:1670:67: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1670 | snprintf(buffer, 200, "%s, compiled %s", nifti_lib_version(), __DATE__); | ^~~~~~~~ gcc -I"/usr/share/R/include" -DNDEBUG -I../tools -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c nifti1_io.c -o nifti1_io.o nifti1_io.c: In function ‘nifti_disp_lib_hist’: nifti1_io.c:472:8: error: format not a string literal and no format arguments [-Werror=format-security] 472 | Rprintf(gni_history[c]); | ^~~~~~~ nifti1_io.c: In function ‘nifti_disp_matrix_orient’: nifti1_io.c:1160:4: error: format not a string literal and no format arguments [-Werror=format-security] 1160 | if ( mesg ) Rprintf(mesg); /* use stdout? */ | ^~ nifti1_io.c: In function ‘disp_nifti_1_header’: nifti1_io.c:3536:4: error: format not a string literal and no format arguments [-Werror=format-security] 3536 | if ( info ) Rprintf( info ); | ^~ nifti1_io.c: In function ‘nifti_image_infodump’: nifti1_io.c:5153:4: error: format not a string literal and no format arguments [-Werror=format-security] 5153 | if( str != NULL ){ REprintf(str); /*fputs(str,stderr)*/ ; free(str) ; } | ^~ cc1: some warnings being treated as errors make[1]: *** [/usr/lib/R/etc/Makeconf:195: nifti1_io.o] Error 1 make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' make[1]: Entering directory '/<<PKGBUILDDIR>>/src' make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' ERROR: compilation failed for package ‘Rniftilib’ * removing ‘/<<PKGBUILDDIR>>/debian/r-cran-rniftilib/usr/lib/R/site-library/Rniftilib’ dh_auto_install: error: R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-rniftilib/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 22 Dec 2023 08:50:35 +0100'" returned exit code 1 make: *** [debian/rules:4: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202405/ About the archive rebuild: The build was made on virtual machines of type m6a.large and r6a.large from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
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--- Begin Message ---Version: 0.0-35.r79-7+rm Dear submitter, as the package r-cran-rniftilib has just been removed from the Debian archive unstable we hereby close the associated bug reports. We are sorry that we couldn't deal with your issue properly. For details on the removal, please see https://bugs.debian.org/1072070 The version of this package that was in Debian prior to this removal can still be found using https://snapshot.debian.org/. Please note that the changes have been done on the master archive and will not propagate to any mirrors until the next dinstall run at the earliest. This message was generated automatically; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]. Debian distribution maintenance software pp. Scott Kitterman (the ftpmaster behind the curtain)
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