Bug#1072765: marked as done (python-skbio: FTBFS: dh_sphinxdoc: error: debian/python-skbio-doc/usr/share/doc/python-skbio-doc/html/_static/js/jquery-fix.js is missing)

[Debian Bug Tracking System]

Your message dated Fri, 14 Jun 2024 10:53:01 +0300
with message-id <zmv23brcdzute...@mitya57.me>
and subject line Re: Bug#1072765: python-skbio: FTBFS: dh_sphinxdoc: error: 
debian/python-skbio-doc/usr/share/doc/python-skbio-doc/html/_static/js/jquery-fix.js
 is missing
has caused the Debian Bug report #1072765,
regarding python-skbio: FTBFS: dh_sphinxdoc: error: 
debian/python-skbio-doc/usr/share/doc/python-skbio-doc/html/_static/js/jquery-fix.js
 is missing
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1072765: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1072765
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Package: src:python-skbio
Version: 0.5.9-4
Severity: serious
Tags: ftbfs

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules binary
dh binary --with sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mv simde-sse2.h simde-sse2.h.orig
rm -f skbio/alignment/_ssw_wrapper.c skbio/diversity/_phylogenetic.c 
skbio/stats/__subsample.c skbio/metadata/_intersection.c
dh_auto_configure
I: pybuild base:311: python3.12 setup.py config
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 
'language_level' not set, using 2 for now (Py2). This will change in a later release! File: 
/<<PKGBUILDDIR>>/skbio/alignment/_ssw_wrapper.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 
'language_level' not set, using 2 for now (Py2). This will change in a later release! File: 
/<<PKGBUILDDIR>>/skbio/diversity/_phylogenetic.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)

[... snipped ...]

copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/blast6_default_single_line
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/phylip_invalid_seq_too_short
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/legacy9_and_blast7_default
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/error_long_qual.fastq
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/fastq_whitespace_only_lines
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/phylip_invalid_too_many_seqs
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/fasta_multi_seq 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/phylip_invalid_empty_line_before_header
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/legacy9_invalid_too_many_columns
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/stockholm_whitespace_only_lines
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/stockholm_no_data
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/error_diff_ids.fastq
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/stockholm_metadata_only
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/qual_5_blanks_start_of_file
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/ordination_error4
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/fasta_single_seq
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/qual_ws_lines_end_of_file
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/fasta_single_rna_seq_defaults
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/fasta_blanks_end_of_file
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/data/stockholm_malformed_data_line
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/test_base.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/test_blast6.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/test_clustal.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/test_fasta.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/test_genbank.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/test_qseq.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/test_sequence_feature_vocabulary.py
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/test_taxdump.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/tests/__init__.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/_blast.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/qseq.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/gff3.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/_sequence_feature_vocabulary.py
 -> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/fasta.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/emptyfile.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/fastq.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/blast6.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/binary_dm.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/genbank.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/newick.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/embl.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/__init__.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/format/ordination.py 
-> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/util.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/_iosources.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/_exception.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/_warning.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/__pycache__/registry.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/__pycache__/_iosources.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/__pycache__/_fileobject.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/__pycache__/util.cpython-311.pyc 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/__pycache__/_warning.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/__pycache__/_exception.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/__pycache__
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/test_util.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/test_registry.py 
-> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/test_iosources.py 
-> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/__pycache__/test_iosources.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/__pycache__/test_registry.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/__pycache__/test_util.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/__pycache__
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/data/example_file 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/data/big5_file.gz 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/data/real_file 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/data/big5_file.bz2 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/data/real_file_2 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/data/example_file.bz2 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/data/example_file.gz -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/data/big5_file 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/tests/__init__.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/registry.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/_fileobject.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/io/__init__.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/__pycache__/workflow.cpython-311.pyc 
-> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/__pycache__/__init__.cpython-311.pyc 
-> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/__pycache__/_base.cpython-311.pyc 
-> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/__pycache__
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tests
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/tests/__pycache__/test_base.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/tests/__pycache__/test_workflow.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/tests/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/tests/test_base.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/tests/test_workflow.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/tests/__init__.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tests
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/_interval.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/_testing.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/_mixin.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/_repr.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/__pycache__/_testing.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/__pycache__/_repr.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/__pycache__/_interval.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/__pycache__/_mixin.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/__pycache__
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/tests/test_interval.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/tests/__pycache__/test_intersection.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/tests/__pycache__/test_mixin.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/tests/__pycache__/test_interval.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/tests/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/tests/test_intersection.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/tests/test_mixin.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/tests/__init__.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/_intersection.cpython-311-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/metadata/__init__.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/_phylogenetic.cpython-311-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/__pycache__/_block.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/__pycache__/_driver.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/__pycache__/_util.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/__pycache__
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/tests/test_util.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/tests/test_driver.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/tests/__pycache__/test_driver.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/tests/__pycache__/test_util.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/tests/__pycache__/test_block.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/tests/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/tests/test_block.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/tests/__init__.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/_util.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/_faith_pd.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/_base.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/_gini.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/__pycache__/_ace.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/__pycache__/_lladser.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/__pycache__/_faith_pd.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/__pycache__/_gini.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/__pycache__/_chao1.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/__pycache__/_base.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/__pycache__
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/test_gini.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/test_lladser.py
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/test_faith_pd.py
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_base.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_ace.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_chao1.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_gini.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_lladser.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_faith_pd.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/__pycache__
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/data
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/README.md
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/test_base.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/test_chao1.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/test_ace.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/tests/__init__.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/_ace.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/_lladser.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/__init__.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/alpha/_chao1.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/_driver.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/__init__.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/_block.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/_unifrac.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/__pycache__/_unifrac.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/__pycache__
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/tests/__pycache__/test_unifrac.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/tests/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/__pycache__
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/data
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/README.md
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/tests/test_unifrac.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/tests/__init__.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/diversity/beta/__init__.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/workflow.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/_repr.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/__pycache__/_pairwise.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/__pycache__/_repr.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/__pycache__/_tabular_msa.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/__pycache__/_indexing.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/_ssw_wrapper.cpython-311-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/_lib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/_lib/__init__.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/_lib
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/tests/__pycache__/test_tabular_msa.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/tests/__pycache__/test_ssw.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/tests/__pycache__/test_pairwise.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/tests/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/tests/test_ssw.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/tests/__init__.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/tests/test_tabular_msa.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/tests/test_pairwise.py 
-> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/_tabular_msa.py 
-> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/_indexing.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/_pairwise.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/alignment/__init__.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/__init__.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/_testing.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/_misc.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/_exception.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/_warning.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/__pycache__/_testing.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/__pycache__/_decorator.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/__pycache__/_misc.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/__pycache__/_warning.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/__pycache__/_exception.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/__pycache__
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/tests/test_misc.py 
-> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/tests/test_testing.py 
-> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests
creating 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/tests/__pycache__/test_decorator.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/tests/__pycache__/test_misc.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/tests/__pycache__/test_testing.cpython-311-pytest-8.2.2.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests/__pycache__
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/tests/__pycache__/__init__.cpython-311.pyc
 -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/tests/__init__.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/tests/test_decorator.py 
-> /<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/_decorator.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_skbio/build/skbio/util/__init__.py -> 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/_dna.py
 to _dna.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/_nucleotide_mixin.py
 to _nucleotide_mixin.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/_repr.py
 to _repr.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/tests/test_nucleotide_sequences.py
 to test_nucleotide_sequences.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/tests/test_sequence.py
 to test_sequence.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/tests/test_genetic_code.py
 to test_genetic_code.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/tests/test_grammared_sequence.py
 to test_grammared_sequence.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/tests/test_dna.py
 to test_dna.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/tests/test_distance.py
 to test_distance.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/tests/test_rna.py
 to test_rna.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/tests/test_protein.py
 to test_protein.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/_rna.py
 to _rna.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/_sequence.py
 to _sequence.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/_protein.py
 to _protein.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/distance.py
 to distance.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/_grammared_sequence.py
 to _grammared_sequence.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/_genetic_code.py
 to _genetic_code.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/sequence/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/_base.py
 to _base.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/test.py
 to test.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/composition.py
 to composition.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/gradient.py
 to gradient.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/evolve/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/evolve/tests/test_hommola.py
 to test_hommola.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/evolve/_hommola.py
 to _hommola.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/evolve/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/_misc.py
 to _misc.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/_subsample.py
 to _subsample.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/tests/test_power.py
 to test_power.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/tests/test_misc.py
 to test_misc.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/tests/test_composition.py
 to test_composition.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/tests/test_subsample.py
 to test_subsample.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/tests/test_gradient.py
 to test_gradient.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/_permdisp.py
 to _permdisp.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/_utils.py
 to _utils.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/_mantel.py
 to _mantel.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/_base.py
 to _base.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/_permanova.py
 to _permanova.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/_anosim.py
 to _anosim.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/tests/test_base.py
 to test_base.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/tests/test_permanova.py
 to test_permanova.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/tests/test_permdisp.py
 to test_permdisp.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/tests/test_anosim.py
 to test_anosim.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/tests/test_bioenv.py
 to test_bioenv.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/tests/test_mantel.py
 to test_mantel.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/_bioenv.py
 to _bioenv.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/distance/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/_utils.py
 to _utils.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py
 to _principal_coordinate_analysis.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/tests/test_util.py
 to test_util.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/tests/test_redundancy_analysis.py
 to test_redundancy_analysis.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/tests/test_correspondence_analysis.py
 to test_correspondence_analysis.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py
 to test_canonical_correspondence_analysis.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py
 to test_principal_coordinate_analysis.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/tests/test_ordination_results.py
 to test_ordination_results.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/_ordination_results.py
 to _ordination_results.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/_redundancy_analysis.py
 to _redundancy_analysis.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/_correspondence_analysis.py
 to _correspondence_analysis.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/ordination/_canonical_correspondence_analysis.py
 to _canonical_correspondence_analysis.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/stats/power.py
 to power.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tree/_tree.py
 to _tree.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tree/_exception.py
 to _exception.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tree/_majority_rule.py
 to _majority_rule.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tree/tests/test_tree.py
 to test_tree.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tree/tests/test_majority_rule.py
 to test_majority_rule.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tree/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tree/tests/test_nj.py
 to test_nj.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tree/_nj.py
 to _nj.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tree/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/clustal.py
 to clustal.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/phylip.py
 to phylip.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/_base.py
 to _base.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/blast7.py
 to blast7.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/lsmat.py
 to lsmat.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/stockholm.py
 to stockholm.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/taxdump.py
 to taxdump.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_fastq.py
 to test_fastq.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_ordination.py
 to test_ordination.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_binary_dm.py
 to test_binary_dm.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_emptyfile.py
 to test_emptyfile.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_newick.py
 to test_newick.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_embl.py
 to test_embl.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_phylip.py
 to test_phylip.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_blast7.py
 to test_blast7.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_stockholm.py
 to test_stockholm.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_lsmat.py
 to test_lsmat.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_gff3.py
 to test_gff3.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_base.py
 to test_base.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_blast6.py
 to test_blast6.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_clustal.py
 to test_clustal.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_fasta.py
 to test_fasta.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_genbank.py
 to test_genbank.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_qseq.py
 to test_qseq.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_sequence_feature_vocabulary.py
 to test_sequence_feature_vocabulary.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/test_taxdump.py
 to test_taxdump.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/_blast.py
 to _blast.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/qseq.py
 to qseq.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/gff3.py
 to gff3.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/_sequence_feature_vocabulary.py
 to _sequence_feature_vocabulary.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/fasta.py
 to fasta.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/emptyfile.py
 to emptyfile.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/fastq.py
 to fastq.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/blast6.py
 to blast6.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/binary_dm.py
 to binary_dm.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/genbank.py
 to genbank.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/newick.py
 to newick.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/embl.py
 to embl.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/format/ordination.py
 to ordination.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/util.py
 to util.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/_iosources.py
 to _iosources.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/_exception.py
 to _exception.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/_warning.py
 to _warning.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/test_util.py
 to test_util.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/test_registry.py
 to test_registry.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/test_iosources.py
 to test_iosources.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/registry.py
 to registry.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/_fileobject.py
 to _fileobject.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/io/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tests/test_base.py
 to test_base.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tests/test_workflow.py
 to test_workflow.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/_interval.py
 to _interval.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/_testing.py
 to _testing.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/_mixin.py
 to _mixin.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/_repr.py
 to _repr.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests/test_interval.py
 to test_interval.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests/test_intersection.py
 to test_intersection.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests/test_mixin.py
 to test_mixin.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/metadata/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests/test_util.py
 to test_util.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests/test_driver.py
 to test_driver.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests/test_block.py
 to test_block.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/_util.py
 to _util.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/_faith_pd.py
 to _faith_pd.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/_base.py
 to _base.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/_gini.py
 to _gini.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/test_gini.py
 to test_gini.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/test_lladser.py
 to test_lladser.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/test_faith_pd.py
 to test_faith_pd.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/test_base.py
 to test_base.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/test_chao1.py
 to test_chao1.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/test_ace.py
 to test_ace.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/_ace.py
 to _ace.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/_lladser.py
 to _lladser.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/alpha/_chao1.py
 to _chao1.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/_driver.py
 to _driver.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/_block.py
 to _block.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/_unifrac.py
 to _unifrac.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/test_unifrac.py
 to test_unifrac.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/diversity/beta/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/workflow.py
 to workflow.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/_repr.py
 to _repr.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/_lib/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests/test_ssw.py
 to test_ssw.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests/test_tabular_msa.py
 to test_tabular_msa.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/tests/test_pairwise.py
 to test_pairwise.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/_tabular_msa.py
 to _tabular_msa.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/_indexing.py
 to _indexing.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/_pairwise.py
 to _pairwise.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/alignment/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/_testing.py
 to _testing.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/_misc.py
 to _misc.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/_exception.py
 to _exception.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/_warning.py
 to _warning.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests/test_misc.py
 to test_misc.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests/test_testing.py
 to test_testing.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests/__init__.py
 to __init__.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/tests/test_decorator.py
 to test_decorator.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/_decorator.py
 to _decorator.cpython-311.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/skbio/util/__init__.py
 to __init__.cpython-311.pyc
running install_egg_info
running egg_info
writing scikit_bio.egg-info/PKG-INFO
writing dependency_links to scikit_bio.egg-info/dependency_links.txt
writing requirements to scikit_bio.egg-info/requires.txt
writing top-level names to scikit_bio.egg-info/top_level.txt
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be 
automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be 
automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't 
be automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be 
automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be 
automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be 
automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be 
automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't 
be automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be 
automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be 
automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be 
automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be 
automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't 
be automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be 
automatically included in the manifest: the path must be relative
dependency 
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be 
automatically included in the manifest: the path must be relative
reading manifest file 'scikit_bio.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'simde-sse2.h'
warning: no previously-included files matching '*.pyc' found anywhere in 
distribution
warning: no previously-included files matching '*.pyo' found anywhere in 
distribution
warning: no previously-included files matching '*.so' found anywhere in 
distribution
warning: no previously-included files matching '.*.swp' found anywhere in 
distribution
warning: no previously-included files matching '.coverage' found anywhere in 
distribution
adding license file 'LICENSE.txt'
writing manifest file 'scikit_bio.egg-info/SOURCES.txt'
Copying scikit_bio.egg-info to 
/<<PKGBUILDDIR>>/debian/python3-skbio/usr/lib/python3.11/dist-packages/scikit_bio-0.5.9.egg-info
Skipping SOURCES.txt
running install_scripts
   dh_install -O--buildsystem=pybuild
   dh_installdocs -O--buildsystem=pybuild
   debian/rules override_dh_sphinxdoc
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link --package=python-skbio-doc \
        /usr/share/javascript/mathjax/MathJax.js \
        /usr/share/doc/python-skbio-doc/html/_static/MathJax.js
dh_sphinxdoc --package=python-skbio-doc
dh_sphinxdoc: error: 
debian/python-skbio-doc/usr/share/doc/python-skbio-doc/html/_static/js/jquery-fix.js
 is missing
make[1]: *** [debian/rules:57: override_dh_sphinxdoc] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:15: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202406/

About the archive rebuild: The build was made on virtual machines
of type m6a.large and r6a.large from AWS, using sbuild and a
reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.

Thanks.

--- End Message ---

--- Begin Message ---

Version: 0.8.1-5
Done: Sergio Durigan Junior <sergi...@sergiodj.net>

On Tue, Jun 11, 2024 at 05:14:20PM -0400, Sergio Durigan Junior wrote:
> This problem was introduced by:
> 
> https://salsa.debian.org/python-team/packages/sphinx-bootstrap-theme/-/commit/974f47fade1fa7de53c9dd1ec152536d7119942c
> 
> It's clearly wrong to stop installing the js/font files here; they are
> exactly what makes the theme work.  Arguably the package should be using
> js/font files from existing Debian packages, but that's another issue
> and there's a bug for it.
> 
> Reassigning.

I see your upload fixes this (thanks!), so closing this bug.

--
Dmitry Shachnev

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--- End Message ---