Your message dated Fri, 28 Jun 2024 02:53:16 +0000
with message-id <[email protected]>
and subject line Bug#1074302: fixed in unifrac 1.3-3~exp1
has caused the Debian Bug report #1074302,
regarding unifrac: autopkgtest failure with python3-skbio 0.6.1-1 from
experimental
to be marked as done.
This means that you claim that the problem has been dealt with.
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1074302: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1074302
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--- Begin Message ---
Source: unifrac
Version: 1.3-2
Severity: important
X-Debbugs-Cc: [email protected], [email protected]
Hello team,
While upgrading the qiime/q2-* packages (specifically q2-diversity-lib), I
noticed that there is a new version of python-skbio, 0.6; Testing that in
experimental show that unifrac is the only package not compatible with the new
version of python-skbio.
https://ci.debian.net/packages/u/unifrac/unstable/amd64/48132933/#L688
There are 4 errors, all with the same message:
> ValueError: ``taxa`` is required for phylogenetic diversity metrics.
So we need a patch to add in the "taxa" keyword to the calls to
skbio.diversity.beta_diversity in unifrac's tests.
Thanks!
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--- End Message ---
--- Begin Message ---
Source: unifrac
Source-Version: 1.3-3~exp1
Done: Emmanuel Arias <[email protected]>
We believe that the bug you reported is fixed in the latest version of
unifrac, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Emmanuel Arias <[email protected]> (supplier of updated unifrac package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
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Format: 1.8
Date: Thu, 27 Jun 2024 19:42:52 -0300
Source: unifrac
Architecture: source
Version: 1.3-3~exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Emmanuel Arias <[email protected]>
Closes: 1074302
Changes:
unifrac (1.3-3~exp1) experimental; urgency=medium
.
* Team upload
* d/patches/update_test_api_according_to_skbio.patch: Add patch to
make work test_api.py test with the last python-skbio upstream
version (Closes: #1074302).
* d/control: Bump Standards-Version to 4.7.0 (from 4.6.2; no further changes
needed).
* d/salsa-ci.yml: Add RELEASE variable to build in experimental.
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